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[190938_s_at] alcohl dehydrogenase like

Description ZK829.7 /REP_DB=WormBase Gene ID /WP=CE18467 /TR=Q23624 /GB=CAA98080.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=alcohl dehydrogenase like
Cluster 6grp_highest_10_10 > 47      6grp_high1_10_10 > 73      4grp_highest_8_8 > 50      4grp_high_8_8 > 32      6grp_highest_nonorm > 56      6grp_total > 64      4grp_total > 47      6grp_high1_sub > 03_04      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 748
1 2 3 4 range
A 1870.1
(3)
P 		1704.5
(0.6)
P 		1463.4
(-3)
P 		1530.2
(-2)
P 		407
B 2203.3
(3)
P 		1645.5
(-3)
P 		1655.7
(-2.9)
P 		1649.4
(-3)
P 		558
C 2115.9
(3)
P 		1454.9
(-3)
P 		1623.8
(-1.5)
P 		1492.4
(-2.7)
P 		661
avr 2063.1
(3) 		1601.6
(-2.5) 		1581
(-2.7) 		1557.3
(-3) 		506

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 962
1 2 3 4 5 6 range
A 1811.5
(-3)
P 		2004.1
(-0.9)
P 		2352.1
(3)
P 		2201.3
(1.3)
P 		1994.9
(-1)
P 		2028
(-0.6)
P 		541
B 1754.5
(-2)
P 		1670.2
(-3)
P 		2153
(2.8)
P 		2098.3
(2.1)
P 		1976.1
(0.7)
P 		2170
(3)
P 		500
C 1670.9
(-3)
P 		1723.1
(-2.7)
P 		2632.1
(3)
P 		2530.8
(2.4)
P 		1871.7
(-1.7)
P 		2393
(1.5)
P 		961
avr 1745.6
(-3) 		1799.1
(-2.5) 		2379.1
(3) 		2276.8
(2) 		1947.6
(-1.1) 		2197
(1.3) 		634
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 479
1 2 3 4 range
A 680.9
(3)
P 		370
(-1.1)
P 		382.6
(-0.9)
P 		224
(-3)
P 		457
B 702.6
(3)
P 		406.4
(-2.1)
P 		383.7
(-2.4)
P 		351.5
(-3)
P 		351
C 700.4
(3)
P 		418.3
(-0.8)
P 		566
(1.2)
P 		251.6
(-3)
P 		449
avr 694.6
(3) 		398.2
(-1.2) 		444.1
(-0.6) 		275.7
(-3) 		419

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 475
1 2 3 4 5 6 range
A 333.9
(-3)
P 		712.8
(3)
P 		512.2
(-0.2)
P 		558.3
(0.6)
P 		602
(1.2)
P 		493.8
(-0.5)
P 		379
B 610.5
(-1.2)
P 		555.9
(-2.3)
P 		522.8
(-3)
P 		555.8
(-2.3)
P 		802.9
(2.9)
P 		809.2
(3)
P 		286
C 619.3
(-0.7)
P 		525.8
(-2.7)
P 		669.9
(0.3)
P 		508.9
(-3)
P 		605.6
(-1)
P 		801.1
(3)
P 		292
avr 521.2
(-3) 		598.2
(-0.4) 		568.3
(-1.4) 		541
(-2.3) 		670.2
(2) 		701.4
(3) 		180
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 190938_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9635
Sequence Type Exemplar sequence
Representative Public ID ZK829.7 NCBI
Target Description ZK829.7 /REP_DB=WormBase Gene ID /WP=CE18467 /TR=Q23624 /GB=CAA98080.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=alcohl dehydrogenase like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069868(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069868 NCBI Caenorhabditis elegans ZK829.7 (ZK829.7) mRNA, complete cds. 11/11 None
SNAP00000012766 ENSEMBL cdna:SNAP chromosome:CEL140:IV:11960214:11961502:-1 11/11 None
GENEFINDER00000012780 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:11960214:11961502:-1 11/11 None
ZK829.7 ENSEMBL cdna:known chromosome:CEL140:IV:11959869:11961505:-1 gene:ZK829.7 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11960219-11961508(-) 100.0 100.0
Public Domain and Genome References
Gene Title alcohl dehydrogenase like
Ensembl ZK829.7
Entrez Gene 178132 Entrez gene
SwissProt Q23624 EMBL-EBI
WormBase CE18467 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1638498_S_AT dm
DROSGENOME1:152715_AT dm
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
4024 alcohol dehydrogenase activity, zinc-dependent inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA98080 Hypothetical protein ZK829.7 [Caenorhabditis elegans] ref|NP_502269.1| ZK829.7 [Caenorhabditis elegans] 0.0
blast CAE62155 Hypothetical protein CBG06201 [Caenorhabditis briggsae] 0.0
blast AAY63990 putative zinc-dependent alcohol dehydrogenase [Lysiphlebus testaceipes] 1.0E-48
Protein Domains
Database ID Description E-Value
Pfam IPR002085 EMBL-EBI Zinc-containing alcohol dehydrogenase superfamily 2.0E-51
Sequence
Target Sequence 
>C. ELEGANS:190938_S_AT
ttggactttggcttcttaaactcgccaagcatttcctagcgatcaacaatgataaaaaga
tccgtttgatggttgctgatgccaaagaagaacgtttgtctctggccgaaagaaacggag
ctgactttgtagtacactgggatgattccgaatttgaagaatatctgattatgagaacta
aggatgtggctcgtaccggtgtcaatgttgttttcgattttgtgacatctccaagaactg
tcactcgatcattgaagtgtctcgctgaaggtggtgtcttatttgttggaggtctttccg
gtcttgatgttcaacttccaatcaagcacgttgctaaaaacagactggccattatgggag
ttacgagaggaagtatcgaacaactgaaaaaccttgtaaatttgattgccggaggccaaa
tcgatgctccagactacagagtttatccagtcgatcaagcgtctgcagtgttgaagcaat
tgtcgatgtcggaggttgaaggtcgtgccattctcgaagtttgcgatccctcttcagcat
tagatgca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGGACTTTGGCTTCTTAAACTCGC 394 665 539 Antisense
TAAACTCGCCAAGCATTTCCTAGCG 371 641 555 Antisense
GAACGTTTGTCTCTGGCCGAAAGAA 102 187 628 Antisense
TGGCTCGTACCGGTGTCAATGTTGT 378 543 725 Antisense
TCTCCAAGAACTGTCACTCGATCAT 515 609 766 Antisense
AAGTGTCTCGCTGAAGGTGGTGTCT 152 159 793 Antisense
GTCTTTCCGGTCTTGATGTTCAACT 146 469 830 Antisense
CCAAATCGATGCTCCAGACTACAGA 229 275 954 Antisense
GGTTGAAGGTCGTGCCATTCTCGAA 149 497 1032 Antisense
CATTCTCGAAGTTTGCGATCCCTCT 261 217 1047 Antisense
CGATCCCTCTTCAGCATTAGATGCA 507 249 1062 Antisense
Sequence Source Affymetrix Proprietary Database