[Home] | [Total List]

[190936_s_at] Mouse KE2 protein like

Description F21C3.5 /REP_DB=WormBase Gene ID /WP=CE05680 /TR=SW:P52554 /GB=CAA95804.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Mouse KE2 protein like
Cluster 6grp_highest_10_10 > 46      6grp_high1_10_10 > 54      4grp_highest_8_8 > 22      4grp_high_8_8 > 14      6grp_highest_nonorm > 61      6grp_total > 44      4grp_total > 09      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1336
1 2 3 4 range
A 448.8
(-3)
P 		529.8
(-2.5)
P 		568.8
(-2.2)
P 		1400.5
(3)
P 		952
B 511.9
(-3)
P 		622.6
(-2.4)
P 		765.2
(-1.5)
P 		1539.4
(3)
P 		1028
C 636
(-3)
P 		669.9
(-2.8)
P 		819.7
(-2)
P 		1785
(3)
P 		1149
avr 532.2
(-3) 		607.4
(-2.6) 		717.9
(-1.9) 		1575
(3) 		1043

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 614
1 2 3 4 5 6 range
A 400.1
(-1.5)
P 		429.8
(-1.3)
P 		865.6
(3)
P 		409.1
(-1.5)
P 		251.3
(-3)
P 		296.5
(-2.6)
P 		614
B 522.6
(0.7)
P 		494.5
(0.2)
P 		663.7
(3)
P 		391.1
(-1.5)
P 		298.1
(-3)
P 		492
(0.2)
P 		366
C 467.2
(0.7)
P 		451.9
(0.4)
P 		370.8
(-1.4)
P 		325.3
(-2.4)
P 		298.5
(-3)
P 		570.6
(3)
P 		272
avr 463.3
(0.1) 		458.7
(0) 		633.4
(3) 		375.2
(-1.4) 		282.6
(-3) 		453
(-0.1) 		351
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 213
1 2 3 4 range
A 163.4
(0.2)
P 		115
(-3)
P 		148.7
(-0.8)
P 		205
(3)
P 		90
B 163.2
(-2.7)
P 		153.8
(-3)
P 		177.3
(-2.2)
P 		328
(3)
P 		174
C 210.5
(-2)
P 		192.6
(-3)
P 		285.7
(2.2)
P 		301
(3)
P 		108
avr 179
(-1.8) 		153.8
(-3) 		203.9
(-0.6) 		278
(3) 		124

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 126
1 2 3 4 5 6 range
A 73.8
(-2.9)
P 		152.9
(1.2)
P 		188.5
(3)
P 		103.8
(-1.4)
P 		75.8
(-2.8)
P 		72.2
(-3)
P 		116
B 181.8
(2.9)
P 		164.6
(1.6)
P 		161.2
(1.3)
P 		103.6
(-3)
P 		121.1
(-1.7)
P 		183.5
(3)
P 		80
C 173.2
(2.1)
P 		137.9
(0.5)
P 		94.4
(-1.6)
P 		65.4
(-3)
P 		96.6
(-1.5)
P 		191
(3)
P 		126
avr 142.9
(2.1) 		151.8
(3) 		148
(2.6) 		90.9
(-3) 		97.8
(-2.3) 		148.9
(2.7) 		61
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 190936_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1181
Sequence Type Exemplar sequence
Representative Public ID F21C3.5 NCBI
Target Description F21C3.5 /REP_DB=WormBase Gene ID /WP=CE05680 /TR=SW:P52554 /GB=CAA95804.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Mouse KE2 protein like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059657(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059657 NCBI Caenorhabditis elegans F21C3.5 (F21C3.5) mRNA, complete cds. 11/11 None
SNAP00000007024 ENSEMBL cdna:SNAP chromosome:CEL140:I:7291261:7291871:-1 11/11 None
GENEFINDER00000007026 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:7291261:7291871:-1 11/11 None
F21C3.5 ENSEMBL cdna:known chromosome:CEL140:I:7291097:7291917:-1 gene:F21C3.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7291191-7291802(-) 100.0 100.0
Public Domain and Genome References
Gene Title Mouse KE2 protein like
Ensembl F21C3.5
Entrez Gene 172474 Entrez gene
SwissProt P52554 EMBL-EBI
WormBase CE05680 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1602182_S_AT similar to MHC class II region expressed gene KE2 cfa
CANINE:1583459_AT similar to MHC class II region expressed gene KE2 cfa
CANINE_2:CFA.4311.1.A1_AT similar to MHC class II region expressed gene KE2 cfa
CANINE_2:CFA.9894.1.A1_AT similar to MHC class II region expressed gene KE2 cfa
CANINE_2:CFA.9894.1.A1_S_AT similar to MHC class II region expressed gene KE2 cfa
DROSOPHILA_2:1635177_AT dm
DROSGENOME1:149078_AT dm
HG-U133_PLUS_2:242048_AT HLA class II region expressed gene KE2 hs
HG-U133B:242048_AT HLA class II region expressed gene KE2 hs
HG-U133_PLUS_2:233588_X_AT HLA class II region expressed gene KE2 hs
HG-U133B:233588_X_AT HLA class II region expressed gene KE2 hs
HU35KSUBC:RC_W88772_AT HLA class II region expressed gene KE2 hs
HG-U133_PLUS_2:222029_X_AT HLA class II region expressed gene KE2 hs
HG-U133A_2:222029_X_AT HLA class II region expressed gene KE2 hs
HG-U133A:222029_X_AT HLA class II region expressed gene KE2 hs
U133_X3P:HS.209117.0.S1_3P_AT HLA class II region expressed gene KE2 hs
U133_X3P:HS.205736.3.A1_3P_A_AT HLA class II region expressed gene KE2 hs
U133_X3P:HS.205736.2.S1_3P_X_AT HLA class II region expressed gene KE2 hs
U133_X3P:HS.205736.2.S1_3P_A_AT HLA class II region expressed gene KE2 hs
U133_X3P:HS.205736.1.S1_3P_X_AT HLA class II region expressed gene KE2 hs
HG-U133A_2:222019_AT HLA class II region expressed gene KE2 hs
HG-FOCUS:222019_AT HLA class II region expressed gene KE2 hs
HG-U133_PLUS_2:222019_AT HLA class II region expressed gene KE2 hs
HG-U133A:222019_AT HLA class II region expressed gene KE2 hs
HG-U95AV2:35963_AT HLA class II region expressed gene KE2 hs
HG-U95C:55975_AT HLA class II region expressed gene KE2 hs
HG-U95C:58884_AT HLA class II region expressed gene KE2 hs
MU11KSUBA:M65256_S_AT H2-K region expressed gene 2 mm
MG-U74AV2:95158_AT H2-K region expressed gene 2 mm
MOE430A:1415744_AT H2-K region expressed gene 2 mm
MOE430B:1415744_AT H2-K region expressed gene 2 mm
MOUSE430A_2:1415744_AT H2-K region expressed gene 2 mm
MOUSE430_2:1415744_AT H2-K region expressed gene 2 mm
RAE230A:1371770_AT MHC class II region expressed gene KE2 rn
RAT230_2:1371770_AT MHC class II region expressed gene KE2 rn
RG-U34B:RC_AA944412_AT MHC class II region expressed gene KE2 rn
Protein Similarities
Method ID Description E-Value
blast CAA95804 Hypothetical protein F21C3.5 [Caenorhabditis elegans] ref|NP_492058.1| F21C3.5 [Caenorhabditis elegans] sp|P52554|PFD6_CAEEL Probable prefoldin subunit 5.0E-53
blast CAE74219 Hypothetical protein CBG21902 [Caenorhabditis briggsae] 2.0E-46
blast NP_001015908 hypothetical protein LOC548662 [Xenopus tropicalis] 7.0E-19
Protein Domains
Database ID Description E-Value
scop a.2.5.Prefoldin All alpha proteins; Long alpha-hairpin; Prefoldin; Prefoldin 0.28999999165535
Pfam IPR002777 EMBL-EBI Prefoldin-related KE2 protein 1.8E-39
Sequence
Target Sequence 
>C. ELEGANS:190936_S_AT
aagaccgcgaaaagtacttcacgagtcgccaagagatggaaatgagattaactgagagta
aaaatgtgaaagcggagcttgatctgatggaatccgactcgaaagtctacaaactcatcg
gagcggttcttgttcgtcaagatttggaggaggctcgatcgactgtggagaaacggcttg
agtttatcgactctgagaccaaacgagtggaagccagcatctcagacatttcgaagaagt
gtacggaacagcgagacaaggtgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGACCGCGAAAAGTACTTCACGAG 588 153 68 Antisense
GTACTTCACGAGTCGCCAAGAGATG 579 459 81 Antisense
AAAGCGGAGCTTGATCTGATGGAAT 265 125 136 Antisense
GATGGAATCCGACTCGAAAGTCTAC 546 405 153 Antisense
GAAAGTCTACAAACTCATCGGAGCG 332 361 168 Antisense
TCATCGGAGCGGTTCTTGTTCGTCA 710 619 182 Antisense
TGGAGGAGGCTCGATCGACTGTGGA 225 549 212 Antisense
GATCGACTGTGGAGAAACGGCTTGA 398 415 224 Antisense
AACGGCTTGAGTTTATCGACTCTGA 601 143 239 Antisense
GAAGCCAGCATCTCAGACATTTCGA 142 345 277 Antisense
GTACGGAACAGCGAGACAAGGTGAT 632 455 308 Antisense
Sequence Source Affymetrix Proprietary Database