[Home] | [Total List]

[190935_at] G-protein coupled receptor, srv family

Description C14A4.10 /REP_DB=WormBase Gene ID /WP=CE02139 /GEN=taf-6 /TR=Q17957 /GB=CAA90114.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=FUN81 protein
Cluster 6grp_total > 25      4grp_total > 39      6grp_cgc > 33      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S2      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 95
1 2 3 4 range
A 108.8
(3)
P 		13.5
(-3)
A 		31.7
(-1.9)
A 		31.7
(-1.9)
A 		95
B 89.3
(3)
M 		54.2
(-3)
A 		54.4
(-3)
A 		63.9
(-1.3)
A 		35
C 90.5
(3)
P 		45.2
(-2)
A 		35.6
(-3)
A 		50.4
(-1.4)
A 		55
avr 96.2
(3) 		37.6
(-3) 		40.6
(-2.7) 		48.7
(-1.9) 		59

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 64
1 2 3 4 5 6 range
A 95.6
(3)
A 		84.1
(1.9)
P 		45.8
(-1.7)
P 		45.4
(-1.7)
A 		31.6
(-3)
A 		42.5
(-2)
A 		64
B 76.1
(2.3)
A 		82
(3)
P 		66.4
(1.1)
M 		33.1
(-3)
A 		44.4
(-1.6)
A 		33.3
(-3)
A 		49
C 73.6
(1)
P 		93
(3)
A 		43.4
(-2)
A 		34
(-3)
A 		38.1
(-2.6)
A 		40.3
(-2.4)
A 		59
avr 81.8
(2.4) 		86.4
(3) 		51.9
(-1.2) 		37.5
(-3) 		38
(-2.9) 		38.7
(-2.9) 		49
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 37
1 2 3 4 range
A 39.6
(3)
P 		2.9
(-3)
A 		8.3
(-2.1)
A 		4.6
(-2.7)
A 		37
B 28.5
(3)
M 		13.4
(-2.7)
A 		12.6
(-3)
A 		13.6
(-2.6)
A 		16
C 30
(3)
P 		13
(-1.7)
A 		12.4
(-1.9)
A 		8.5
(-3)
A 		22
avr 32.7
(3) 		9.8
(-2.8) 		11.1
(-2.4) 		8.9
(-3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 17.6
(-0.6)
A 		29.9
(3)
P 		10
(-2.9)
P 		11.5
(-2.4)
A 		9.5
(-3)
A 		10.4
(-2.7)
A 		20
B 26.5
(2.7)
A 		27.3
(3)
P 		16.1
(-0.6)
M 		8.8
(-3)
A 		18.1
(0)
A 		12.4
(-1.8)
A 		19
C 27.3
(2.7)
P 		28.4
(3)
A 		11
(-1.8)
A 		6.8
(-3)
A 		12.3
(-1.5)
A 		13.5
(-1.1)
A 		22
avr 23.8
(1.6) 		28.5
(3) 		12.4
(-2) 		9
(-3) 		13.3
(-1.7) 		12.1
(-2) 		20
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190935_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3976
Sequence Type Exemplar sequence
Representative Public ID C14A4.10 NCBI
Target Description C14A4.10 /REP_DB=WormBase Gene ID /WP=CE02139 /GEN=taf-6 /TR=Q17957 /GB=CAA90114.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=FUN81 protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_182261(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_182261 NCBI Caenorhabditis elegans Serpentine Receptor, class V family member (srv-2) (srv-2) mRNA, complete cds. 11/11 None
GENEFINDER00000002503 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:10600510:10602187:-1 10/11 None
C14A4.15 ENSEMBL cdna:known chromosome:CEL140:II:10600510:10602187:-1 gene:C14A4.15 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000002491 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:10600506-10605510(-) 97.06 100.0
Public Domain and Genome References
Gene Title G-protein coupled receptor, srv family
Gene Symbol srv-2
Ensembl C14A4.15
Entrez Gene 353479 Entrez gene
SwissProt Q86GC5 EMBL-EBI
WormBase CE33031 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7165 signal transduction inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4888 transmembrane receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAD60413 Hypothetical protein C14A4.15 [Caenorhabditis elegans] ref|NP_872061.1| Serpentine Receptor, class V family member (srv-2) [Caenorhabditis elegans] 1.0E-161
blast CAD60413 Hypothetical protein C14A4.15 [Caenorhabditis elegans] ref|NP_872061.1| Serpentine Receptor, class V family member (srv-2) [Caenorhabditis elegans] 1.0E-146
blast CAE59635 Hypothetical protein CBG03048 [Caenorhabditis briggsae] 1.0E-120
blast CAE59635 Hypothetical protein CBG03048 [Caenorhabditis briggsae] 1.0E-108
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_872061.1 6 7-29,44-66,122-139,171-193,217-239,252-274
C14A4.15 6 7-29,44-66,122-139,171-193,217-239,252-274
GENEFINDER00000002503 6 13-32,52-69,90-112,122-139,224-246,259-281
Sequence
Target Sequence 
>C. ELEGANS:190935_AT
tcggctgtcagctattgtatatcctattcaacacaacaagttctggacgaagaagatcac
attgttgttgtttctgagtggaatgattttagctatcattccgactgctagcagagcatc
acaaccagctgcatatattcatgttaatggaagtttcattccatttttgattgatgcagg
agatcaagagaacaactcaaaagtgacctgcataatctacatatttttctgtttcttcag
tcttctatgcaatatgctggcatgttttgtgcatcgaaagcagaaacgaatgcagttctt
tgagacccagccaaaactcgcatcgactgttcagacaaatttgctcatttatgcgtgttt
atcaacagttattgtgttggcaatgacttgctttcagtccttgctagcattccacgtgtt
tgacctatcagcaaaagcttatcaaatagtcctttggcttctgacagtctccgccgatgc
atttgctctctcaaatccatggctcttgttctgcctttcaagtacattccgacac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGGCTGTCAGCTATTGTATATCCT 180 607 633 Antisense
TAGCTATCATTCCGACTGCTAGCAG 637 651 722 Antisense
GCTAGCAGAGCATCACAACCAGCTG 704 301 739 Antisense
TTCTGTTTCTTCAGTCTTCTATGCA 572 693 859 Antisense
GAATGCAGTTCTTTGAGACCCAGCC 301 331 920 Antisense
GCCAAAACTCGCATCGACTGTTCAG 60 279 942 Antisense
GCAATGACTTGCTTTCAGTCCTTGC 51 323 1012 Antisense
ATTCCACGTGTTTGACCTATCAGCA 345 7 1041 Antisense
AATAGTCCTTTGGCTTCTGACAGTC 378 173 1077 Antisense
CAAATCCATGGCTCTTGTTCTGCCT 121 193 1124 Antisense
CTGCCTTTCAAGTACATTCCGACAC 591 235 1143 Antisense
Sequence Source Affymetrix Proprietary Database