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[190934_s_at] calreticulin precursor

Description Y38A10A.5 /REP_DB=WormBase Gene ID /WP=CE21562 /GEN=crt-1 /GB=AAD14746.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=calreticulin precursor
Cluster 6grp_highest_10_10 > 02      6grp_high1_10_10 > 20      4grp_highest_8_8 > 06      4grp_high_8_8 > 22      6grp_highest_nonorm > 09      6grp_total > 50      4grp_total > 17      6grp_cgc > 60      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27544
1 2 3 4 range
A 19874.2
(-3)
P 		32271.9
(-0.3)
P 		29323.3
(-0.9)
P 		47194.7
(3)
P 		27321
B 20040.8
(-3)
P 		26872.9
(-0.7)
P 		28719.9
(-0.1)
P 		38002.4
(3)
P 		17962
C 19650.8
(-3)
P 		22899.5
(-2.2)
P 		23175.2
(-2.1)
P 		43083.4
(3)
P 		23433
avr 19855.3
(-3) 		27348.1
(-1) 		27072.8
(-1.1) 		42760.2
(3) 		22905

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14910
1 2 3 4 5 6 range
A 30429.2
(3)
P 		20860.1
(-1.8)
P 		22060.1
(-1.2)
P 		24635.5
(0.1)
P 		18426.5
(-3)
P 		22266.3
(-1.1)
P 		12003
B 21703.6
(0.8)
P 		18986.9
(-1)
P 		25268.9
(3)
P 		21981.1
(0.9)
P 		15757.7
(-3)
P 		16633.6
(-2.4)
P 		9511
C 20364.4
(-0.5)
P 		19936.4
(-0.8)
P 		27311
(3)
P 		22117.9
(0.4)
P 		17567.2
(-2)
P 		15519.5
(-3)
P 		11792
avr 24165.7
(2.4) 		19927.8
(-0.9) 		24880
(3) 		22911.5
(1.5) 		17250.5
(-3) 		18139.8
(-2.3) 		7630
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1708
1 2 3 4 range
A 7236.2
(-0.4)
P 		7005.4
(-2.2)
P 		7665.7
(3)
P 		6908.4
(-3)
P 		757
B 6390.8
(-3)
P 		6637
(-2.1)
P 		6655.1
(-2.1)
P 		8098.3
(3)
P 		1708
C 6505
(-3)
P 		6583.7
(-2.7)
P 		8077.3
(3)
P 		7264.5
(-0.1)
P 		1572
avr 6710.7
(-3) 		6742
(-2.8) 		7466
(3) 		7423.7
(2.7) 		755

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3104
1 2 3 4 5 6 range
A 5609.4
(-1.2)
P 		7418.9
(3)
P 		4804.2
(-3)
P 		6248.1
(0.3)
P 		5560.3
(-1.3)
P 		5421.1
(-1.6)
P 		2615
B 7551.8
(3)
P 		6319.9
(-1.3)
P 		6136
(-1.9)
P 		5822
(-3)
P 		6402.1
(-1)
P 		6202.6
(-1.7)
P 		1730
C 7548.2
(3)
P 		6083.2
(0.2)
P 		6951.1
(1.8)
P 		4447.9
(-3)
P 		5684.5
(-0.6)
P 		5195.3
(-1.6)
P 		3100
avr 6903.1
(3) 		6607.3
(1.7) 		5963.8
(-1) 		5506
(-3) 		5882.3
(-1.4) 		5606.3
(-2.6) 		1397
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 190934_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12308
Sequence Type Exemplar sequence
Representative Public ID Y38A10A.5 NCBI
Target Description Y38A10A.5 /REP_DB=WormBase Gene ID /WP=CE21562 /GEN=crt-1 /GB=AAD14746.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=calreticulin precursor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072174(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072174 NCBI Caenorhabditis elegans CalReTiculin family member (crt-1) (crt-1) mRNA, complete cds. 11/11 None
SNAP00000035785 ENSEMBL cdna:SNAP chromosome:CEL140:V:6101766:6103103:-1 11/11 None
Y38A10A.5.1 ENSEMBL cdna:known chromosome:CEL140:V:6101587:6103136:-1 gene:Y38A10A.5 11/11 None
Y38A10A.5.2 ENSEMBL cdna:known chromosome:CEL140:V:6101587:6103147:-1 gene:Y38A10A.5 11/11 None
Y38A10A.5.3 ENSEMBL cdna:known chromosome:CEL140:V:6101587:6103141:-1 gene:Y38A10A.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6101765-6103103(-) 95.29 100.0
Public Domain and Genome References
Gene Title calreticulin precursor
Gene Symbol crt-1
Ensembl Y38A10A.5
Entrez Gene 178997 Entrez gene
SwissProt P27798 EMBL-EBI
WormBase CE21562 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:264260_AT calreticulin 2 (CRT2) at
ATGENOME1:13065_I_AT calreticulin 2 (CRT2) at
ATGENOME1:13066_R_AT calreticulin 2 (CRT2) at
ATGENOME1:13067_S_AT calreticulin 2 (CRT2) at
CANINE:1606177_S_AT similar to calreticulin cfa
CANINE:1595929_AT similar to calreticulin cfa
CANINE:1587176_AT similar to calreticulin cfa
CANINE_2:CFA.21464.1.S1_S_AT similar to calreticulin cfa
CANINE_2:CFA.4277.1.A1_A_AT similar to calreticulin cfa
CANINE_2:CFA.4277.1.A1_S_AT similar to calreticulin cfa
DROSOPHILA_2:1639441_AT Calreticulin dm
DROSGENOME1:143547_AT Calreticulin dm
HG-U95AV2:32543_AT calreticulin hs
HG-U133_PLUS_2:200935_AT calreticulin hs
HG-U133A_2:200935_AT calreticulin hs
HG-U133A:200935_AT calreticulin hs
HG-U95AV2:1752_AT calreticulin hs
HC-G110:1752_AT calreticulin hs
HUGENEFL:M84739_AT calreticulin hs
U133_X3P:G5921996_3P_A_AT calreticulin hs
U133_X3P:HS.16488.3.A1_3P_X_AT calreticulin hs
U133_X3P:HS.16488.2.A1_3P_X_AT calreticulin hs
HG-U133A_2:212953_X_AT calreticulin hs
HG-U133_PLUS_2:212953_X_AT calreticulin hs
HG-U133A:212953_X_AT calreticulin hs
HG-U133A_2:214315_X_AT calreticulin hs
HG-U133_PLUS_2:214315_X_AT calreticulin hs
HG-U133A:214315_X_AT calreticulin hs
HG-U133A_2:212952_AT Calreticulin hs
HG-FOCUS:212952_AT Calreticulin hs
HG-U133_PLUS_2:212952_AT Calreticulin hs
HG-U133A:212952_AT Calreticulin hs
HG-U133A_2:214316_X_AT Calreticulin hs
HG-U133_PLUS_2:214316_X_AT Calreticulin hs
HG-U133A:214316_X_AT Calreticulin hs
U133_X3P:214316_3P_X_AT Calreticulin hs
U133_X3P:HS.16488.3.S1_3P_X_AT Calreticulin hs
U133_X3P:HS.16488.2.S1_3P_AT Calreticulin hs
U133_X3P:HS.16488.2.S1_3P_X_AT Calreticulin hs
MU11KSUBB:X14926_S_AT calreticulin mm
MU11KSUBB:X56603_S_AT calreticulin mm
MG-U74AV2:93523_AT calreticulin mm
MOE430A:1433806_X_AT calreticulin mm
MOUSE430A_2:1433806_X_AT calreticulin mm
MOUSE430_2:1433806_X_AT calreticulin mm
MOE430A:1456170_X_AT calreticulin mm
MOUSE430A_2:1456170_X_AT calreticulin mm
MOUSE430_2:1456170_X_AT calreticulin mm
MOE430A:1417606_A_AT calreticulin mm
MOUSE430A_2:1417606_A_AT calreticulin mm
MOUSE430_2:1417606_A_AT calreticulin mm
MU19KSUBA:TC22732_S_AT Calreticulin, mRNA (cDNA clone MGC:6209 IMAGE:2655918) mm
MU19KSUBA:TC22733_AT Calreticulin, mRNA (cDNA clone MGC:6209 IMAGE:2655918) mm
MU19KSUBB:TC30071_AT Calreticulin, mRNA (cDNA clone MGC:6209 IMAGE:2655918) mm
MU19KSUBB:TC33293_AT Calreticulin, mRNA (cDNA clone MGC:6209 IMAGE:2655918) mm
RT-U34:X53363CDS_S_AT calreticulin rn
RG-U34A:X53363CDS_S_AT calreticulin rn
RG-U34A:D78308_G_AT calreticulin rn
RG-U34A:D78308_AT calreticulin rn
RAE230A:1398750_AT calreticulin rn
RAT230_2:1398750_AT calreticulin rn
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5509 calcium ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAD14746 Calreticulin protein 1 [Caenorhabditis elegans] emb|CAA42159.1| calreticulin [Caenorhabditis elegans] ref|NP_504575.1| CalReTiculin family member (crt-1) [Caenorhabditis elegans] sp|P27798|CRTC_CAEEL Calreticulin precursor 0.0
blast CAE64515 Hypothetical protein CBG09253 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001580 EMBL-EBI Calreticulin/calnexin 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:190934_S_AT
cgaggaggactgggatcttcttccagccaagaagatcaaggatccagatgcaaagaagcc
agaggactgggatgagcgtgagtacatcgatgatgccgaggatgccaagccagaagattg
ggagaagccagagcacatcccagatccagatgccaagaagccagaagactgggatgacga
gatggacggagaatgggagccaccaatgatcgacaacccagaatacaagggtgagtggaa
gccaaagcagatcaagaacccagcctacaagggcaagtggatccatccagagattgagaa
cccagagtacactcctgatgatgaactctactcttatgaaagctggggagccatcggatt
cgatttgtggcaggtcaagtcaggaacgatctttgacaacattatcatcaccgactctgt
tgaggaggccgaggcccatgctgccgagacttttgacaaattgaagactgttgagaagga
aaagaaggagaaggccgacgaagaaacccgca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGAGGAGGACTGGGATCTTCTTCCA 62 251 585 Antisense
TGATGCCGAGGATGCCAAGCCAGAA 392 565 675 Antisense
AGAGCACATCCCAGATCCAGATGCC 603 69 714 Antisense
GGGAGCCACCAATGATCGACAACCC 455 495 779 Antisense
AAAGCAGATCAAGAACCCAGCCTAC 656 123 828 Antisense
GAGAACCCAGAGTACACTCCTGATG 438 391 880 Antisense
AGCTGGGGAGCCATCGGATTCGATT 646 79 925 Antisense
ACAACATTATCATCACCGACTCTGT 92 113 980 Antisense
CCGACTCTGTTGAGGAGGCCGAGGC 81 263 995 Antisense
CCATGCTGCCGAGACTTTTGACAAA 349 271 1020 Antisense
GAGAAGGCCGACGAAGAAACCCGCA 246 389 1072 Antisense
Sequence Source Affymetrix Proprietary Database