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[190932_at] glutathione S-transferase

Description F37B1.6 /REP_DB=WormBase Gene ID /WP=CE09993 /TR=Q93699 /GB=CAB02292.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=glutathione S-transferase
Cluster 6grp_total > 53      4grp_total > 21      6grp_cgc > 91      6grp_cgc_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 26.7
(3)
A 		11.8
(-2.5)
A 		10.4
(-3)
A 		14.1
(-1.6)
A 		16
B 4
(-3)
A 		7.9
(2.9)
A 		5.6
(-0.6)
A 		8
(3)
A 		4
C 8.4
(-3)
A 		12.5
(-1.7)
A 		8.4
(-3)
A 		27.1
(3)
A 		19
avr 13
(0.5) 		10.7
(-1.1) 		8.1
(-3) 		16.4
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 5.8
(-2.3)
A 		5
(-3)
A 		8.1
(-0.1)
A 		6.9
(-1.2)
A 		11.5
(3)
A 		9.6
(1.2)
A 		7
B 20
(-1.3)
A 		6
(-2.9)
A 		56
(3)
A 		13.1
(-2.1)
A 		30
(-0.1)
A 		5.3
(-3)
A 		51
C 5.9
(-3)
A 		9.8
(-2.5)
A 		51.9
(3)
A 		32.3
(0.4)
A 		6.5
(-2.9)
A 		9.2
(-2.6)
A 		46
avr 10.6
(-2.3) 		6.9
(-3) 		38.7
(3) 		17.4
(-1) 		16
(-1.3) 		8
(-2.8) 		32
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 9.7
(3)
A 		2.6
(-2.6)
A 		2.7
(-2.5)
A 		2.1
(-3)
A 		8
B 1.3
(-3)
A 		2
(3)
A 		1.3
(-3)
A 		1.7
(0.4)
A 		1
C 2.8
(-3)
A 		3.6
(-0.3)
A 		2.9
(-2.7)
A 		4.6
(3)
A 		2
avr 4.6
(3) 		2.7
(-2) 		2.3
(-3) 		2.8
(-1.7) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 1.1
(-3)
A 		1.8
(-1.3)
A 		1.8
(-1.3)
A 		1.7
(-1.5)
A 		3.5
(3)
A 		2.3
(-0)
A 		2
B 6.9
(-0.5)
A 		2
(-3)
A 		13.6
(3)
A 		3.5
(-2.2)
A 		12.2
(2.3)
A 		2
(-3)
A 		12
C 2.2
(-2.9)
A 		3
(-2.5)
A 		13.2
(3)
A 		6.5
(-0.6)
A 		2.1
(-3)
A 		3.1
(-2.5)
A 		11
avr 3.4
(-2.1) 		2.3
(-3) 		9.5
(3) 		3.9
(-1.7) 		5.9
(0) 		2.5
(-2.8) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190932_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3994
Sequence Type Exemplar sequence
Representative Public ID F37B1.6 NCBI
Target Description F37B1.6 /REP_DB=WormBase Gene ID /WP=CE09993 /TR=Q93699 /GB=CAB02292.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=glutathione S-transferase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064464(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064464 NCBI Caenorhabditis elegans Glutathione S-Transferase family member (gst-17) (gst-17) mRNA, complete cds. 11/11 None
SNAP00000041647 ENSEMBL cdna:SNAP chromosome:CEL140:II:13625481:13630149:-1 9/11 None
GENEFINDER00000041652 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:13627955:13628814:-1 11/11 None
F37B1.6 ENSEMBL cdna:known chromosome:CEL140:II:13627955:13628694:-1 gene:F37B1.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:13627951-13628691(-) 100.0 100.0
Public Domain and Genome References
Gene Title glutathione S-transferase
Gene Symbol gst-17
Ensembl F37B1.6
Entrez Gene 185411 Entrez gene
SwissProt Q93699 EMBL-EBI
WormBase CE09993 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02292 Hypothetical protein F37B1.6 [Caenorhabditis elegans] ref|NP_496865.1| Glutathione S-Transferase family member (gst-17) [Caenorhabditis elegans] 1.0E-130
blast CAB02292 Hypothetical protein F37B1.6 [Caenorhabditis elegans] ref|NP_496865.1| Glutathione S-Transferase family member (gst-17) [Caenorhabditis elegans] 7.0E-88
blast CAB02294 Hypothetical protein F37B1.8 [Caenorhabditis elegans] ref|NP_496864.1| Glutathione S-Transferase family member (gst-19) [Caenorhabditis elegans] 4.0E-76
blast CAB02293 Hypothetical protein F37B1.7 [Caenorhabditis elegans] ref|NP_496866.1| Glutathione S-Transferase family member (gst-18) [Caenorhabditis elegans] 3.0E-68
blast CAB02289 Hypothetical protein F37B1.3 [Caenorhabditis elegans] ref|NP_496861.1| Glutathione S-Transferase family member (gst-14) [Caenorhabditis elegans] 2.0E-47
blast CAB02288 Hypothetical protein F37B1.2 [Caenorhabditis elegans] ref|NP_496862.1| Glutathione S-Transferase family member (gst-12) [Caenorhabditis elegans] 6.0E-46
Protein Domains
Database ID Description E-Value
Pfam IPR004046 EMBL-EBI Glutathione S-transferase, C-terminal 1.0E-5
Pfam IPR004046 EMBL-EBI Glutathione S-transferase, C-terminal 4.5E-10
Pfam IPR004046 EMBL-EBI Glutathione S-transferase, C-terminal 1.1E-11
Pfam IPR004045 EMBL-EBI Glutathione S-transferase, N-terminal 3.6E-6
Pfam IPR004046 EMBL-EBI Glutathione S-transferase, C-terminal 4.5E-10
Pfam IPR004046 EMBL-EBI Glutathione S-transferase, C-terminal 4.5E-10
Sequence
Target Sequence 
>C. ELEGANS:190932_AT
gtacgtatggtttttccgagttgtgaatgggacaaaaagaagaaaacaaaattgttacag
cgaccccaatgcacactacagcgaccccaatgcacactacagcgaccccaatgaatttga
aattcctcagtctggagcaatcaatagctaccttgccagaaaattcggattcgctggaaa
aaccgcaaaggatcaagcctgggtagacgctacaactgatctttacaaagactttttcga
agtcttccgaaaaatgatccgagcaagacgaaacaaacttccagccgatgagctcgcaaa
gctcacctctgagatcctaattcctgctagacatccatattttgaaattctcaatggtat
tttggagaggaacaagtcaggatatcttgttggagatgacataactttggcagatcttgc
catatccgaaaatgtagacagtctcaaaaactatggacttttcaaggctgaagagcagcc
aaaattggcagctctccgtgaaaaagtgtattcacactcggctcttaagaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTACGTATGGTTTTTCCGAGTTGTG 109 453 132 Antisense
AAATTGTTACAGCGACCCCAATGCA 124 115 180 Antisense
GAAATTCCTCAGTCTGGAGCAATCA 25 365 250 Antisense
GGATCAAGCCTGGGTAGACGCTACA 693 509 321 Antisense
GACGCTACAACTGATCTTTACAAAG 359 381 337 Antisense
GAAACAAACTTCCAGCCGATGAGCT 643 353 401 Antisense
AGCTCACCTCTGAGATCCTAATTCC 244 79 431 Antisense
AATTCCTGCTAGACATCCATATTTT 98 179 450 Antisense
GGCAGATCTTGCCATATCCGAAAAT 129 535 540 Antisense
CCAAAATTGGCAGCTCTCCGTGAAA 641 275 610 Antisense
GTATTCACACTCGGCTCTTAAGAAC 226 453 639 Antisense
Sequence Source Affymetrix Proprietary Database