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[190930_at]

Description DC2.3 /REP_DB=WormBase Gene ID /WP=CE20632 /TR=Q9UAW1 /GB=AAD14724.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=galactoside-binding lectin
Cluster 6grp_highest_10_10 > 91      6grp_high1_10_10 > 39      4grp_highest_8_8 > 30      4grp_high_8_8 > 05      6grp_highest_nonorm > 85      6grp_total > 29      4grp_total > 04      6grp_high1_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 656
1 2 3 4 range
A 768.7
(-0.2)
P 		557.1
(-3)
P 		681.6
(-1.3)
P 		1008.5
(3)
P 		451
B 646.6
(-2.6)
P 		620.9
(-2.9)
P 		613.8
(-3)
P 		1131.6
(3)
P 		518
C 887.9
(-1.2)
P 		814.1
(-2.2)
P 		750.8
(-3)
P 		1212.9
(3)
P 		462
avr 767.7
(-1.6) 		664
(-3) 		682.1
(-2.8) 		1117.7
(3) 		454

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 474
1 2 3 4 5 6 range
A 812.7
(3)
P 		777.9
(1.9)
P 		704.9
(-0.5)
P 		710.1
(-0.4)
P 		659.8
(-2)
P 		629.6
(-3)
P 		183
B 858.1
(0.7)
P 		694.4
(-1.5)
P 		578
(-3)
P 		660.6
(-1.9)
P 		1032.4
(3)
P 		778.4
(-0.4)
P 		454
C 955.8
(3)
P 		571
(-2.8)
P 		682.1
(-1.1)
P 		558.9
(-3)
P 		911.4
(2.3)
P 		814.6
(0.9)
P 		397
avr 875.5
(3) 		681.1
(-2) 		655
(-2.7) 		643.2
(-3) 		867.9
(2.8) 		740.9
(-0.5) 		232
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 173
1 2 3 4 range
A 279.9
(3)
P 		120.9
(-3)
P 		178.2
(-0.8)
P 		147.6
(-2)
P 		159
B 206.2
(0.9)
P 		153.3
(-2.3)
P 		142.2
(-3)
P 		241.1
(3)
P 		99
C 293.9
(3)
P 		234.1
(-1)
P 		261.7
(0.8)
P 		204.5
(-3)
P 		89
avr 260
(3) 		169.4
(-3) 		194
(-1.4) 		197.7
(-1.1) 		91

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 307
1 2 3 4 5 6 range
A 149.8
(-3)
P 		276.6
(3)
P 		153.5
(-2.8)
P 		180.1
(-1.6)
P 		199.1
(-0.7)
P 		153.3
(-2.8)
P 		127
B 298.6
(0.4)
P 		231.1
(-1.1)
P 		140.4
(-3)
P 		175
(-2.3)
P 		419.5
(3)
P 		290.3
(0.2)
P 		279
C 354.3
(3)
P 		174.2
(-1.5)
P 		173.6
(-1.5)
P 		112.4
(-3)
P 		294.9
(1.5)
P 		272.7
(1)
P 		242
avr 267.6
(1.5) 		227.3
(-0.1) 		155.8
(-3) 		155.8
(-3) 		304.5
(3) 		238.8
(0.3) 		149
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190930_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15282
Sequence Type Exemplar sequence
Representative Public ID DC2.3 NCBI
Target Description DC2.3 /REP_DB=WormBase Gene ID /WP=CE20632 /TR=Q9UAW1 /GB=AAD14724.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=galactoside-binding lectin
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028588(11), NM_001028587(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028588 NCBI Caenorhabditis elegans DC2.3b (DC2.3) mRNA, complete cds. 11/11 None
NM_001028587 NCBI Caenorhabditis elegans DC2.3a (DC2.3) mRNA, complete cds. 11/11 None
SNAP00000026549 ENSEMBL cdna:SNAP chromosome:CEL140:V:204219:209459:1 11/11 None
GENEFINDER00000026555 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:204219:209459:1 11/11 None
DC2.3a ENSEMBL cdna:known chromosome:CEL140:V:201452:208194:1 gene:DC2.3 11/11 None
DC2.3b ENSEMBL cdna:known chromosome:CEL140:V:201452:209571:1 gene:DC2.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:201451-208055(+) 100.0 100.0
Public Domain and Genome References
Ensembl DC2.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_001023759 DC2.3b [Caenorhabditis elegans] gb|AAV28359.1| Hypothetical protein DC2.3b [Caenorhabditis elegans] 0.0
blast NP_001023758 DC2.3a [Caenorhabditis elegans] gb|AAD14724.1| Hypothetical protein DC2.3a [Caenorhabditis elegans] 0.0
blast NP_001023758 DC2.3a [Caenorhabditis elegans] gb|AAD14724.1| Hypothetical protein DC2.3a [Caenorhabditis elegans] 1.0E-178
blast NP_001023759 DC2.3b [Caenorhabditis elegans] gb|AAV28359.1| Hypothetical protein DC2.3b [Caenorhabditis elegans] 1.0E-178
blast NP_001023759 DC2.3b [Caenorhabditis elegans] gb|AAV28359.1| Hypothetical protein DC2.3b [Caenorhabditis elegans] 1.0E-171
Protein Domains
Database ID Description E-Value
Pfam IPR001079 EMBL-EBI Galectin, galactose-binding lectin 1.0E-25
Pfam IPR007233 EMBL-EBI Sybindin-like protein 1.5E-20
Pfam IPR001079 EMBL-EBI Galectin, galactose-binding lectin 1.0E-25
Sequence
Target Sequence 
>C. ELEGANS:190930_AT
tcaatagtcggaggcctgttcgctggccgagcaattgtggtcagtggaatggttttgcca
ggattcgcgtcggatcggaaaagatttcaaatcgatctgtgctgtgggctattaattgat
ggagatcatatggacaataaggctcttcattttaatccgagatttgatgcaaaaaccgga
tggttcagcggccctggggacgataagctcgtgatcaactcgttcgtttcgggacgatgg
ggcaacgaagaacgattcgataatccgttcaaggagggagaacccttccagattcggata
atggtttttgagaagtactttaagatctcagccagtggaaaacacatgtgcgatttccca
caccgggttccagttgaatcgattcgaacaatctccatcaacggaaacatccgtgtcgac
tacgtggaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAATAGTCGGAGGCCTGTTCGCTG 339 633 481 Antisense
TTCGCTGGCCGAGCAATTGTGGTCA 75 697 499 Antisense
AATGGTTTTGCCAGGATTCGCGTCG 34 163 528 Antisense
AAATCGATCTGTGCTGTGGGCTATT 240 119 569 Antisense
TTCAGCGGCCCTGGGGACGATAAGC 660 685 664 Antisense
TGATCAACTCGTTCGTTTCGGGACG 673 563 692 Antisense
GGAGAACCCTTCCAGATTCGGATAA 576 517 757 Antisense
AAACACATGTGCGATTTCCCACACC 336 129 820 Antisense
TTCCCACACCGGGTTCCAGTTGAAT 521 453 835 Antisense
GATTCGAACAATCTCCATCAACGGA 523 431 861 Antisense
AAACATCCGTGTCGACTACGTGGAA 613 125 885 Antisense
Sequence Source Affymetrix Proprietary Database