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[190929_at] glutathione S-transferase

Description F37B1.3 /REP_DB=WormBase Gene ID /WP=CE09990 /TR=Q93696 /GB=CAB02289.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=glutathione S-transferase
Cluster 4grp_high_8_8 > 63      6grp_total > 18      4grp_total > 59      6grp_cgc > 11      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 76
1 2 3 4 range
A 70.9
(-2)
P 		93.7
(0.6)
P 		114.2
(3)
P 		62.3
(-3)
A 		52
B 73.6
(1)
P 		78.1
(1.5)
P 		91.4
(3)
P 		37.9
(-3)
A 		54
C 98.1
(2.6)
P 		79.6
(-1.2)
P 		100.1
(3)
P 		70.9
(-3)
P 		29
avr 80.9
(0.2) 		83.8
(0.6) 		101.9
(3) 		57
(-3) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 170
1 2 3 4 5 6 range
A 172
(3)
P 		22.1
(-2.4)
A 		6.3
(-3)
A 		5.5
(-3)
A 		19.4
(-2.5)
A 		27.8
(-2.2)
A 		167
B 155.1
(3)
P 		29.1
(-1.9)
A 		10.6
(-2.7)
A 		2.3
(-3)
A 		4
(-2.9)
A 		26
(-2.1)
A 		153
C 154.7
(3)
P 		50
(-1.1)
P 		4.1
(-3)
A 		20.6
(-2.3)
A 		2.9
(-3)
A 		22.8
(-2.2)
P 		152
avr 160.6
(3) 		33.7
(-2) 		7
(-3) 		9.5
(-2.9) 		8.8
(-2.9) 		25.5
(-2.3) 		154
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 25.8
(1.8)
P 		20.3
(0.2)
P 		29.9
(3)
P 		9.1
(-3)
A 		21
B 23.5
(3)
P 		19.3
(1.4)
P 		21.2
(2.1)
P 		8.1
(-3)
A 		15
C 32.5
(2.4)
P 		22.9
(-0.1)
P 		34.9
(3)
P 		11.9
(-3)
P 		23
avr 27.3
(2.6) 		20.8
(0.5) 		28.7
(3) 		9.7
(-3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 31.7
(3)
P 		7.9
(-1.7)
A 		1.4
(-3)
A 		1.4
(-3)
A 		5.9
(-2.1)
A 		6.8
(-1.9)
A 		30
B 54
(3)
P 		9.7
(-2)
A 		2.6
(-2.8)
A 		0.6
(-3)
A 		1.6
(-2.9)
A 		9.7
(-2)
A 		53
C 57.4
(3)
P 		15.3
(-1.5)
P 		1.1
(-3)
A 		4.1
(-2.7)
A 		1
(-3)
A 		7.6
(-2.3)
P 		56
avr 47.7
(3) 		11
(-1.8) 		1.7
(-3) 		2
(-3) 		2.8
(-2.9) 		8
(-2.2) 		46
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190929_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3450
Sequence Type Exemplar sequence
Representative Public ID F37B1.3 NCBI
Target Description F37B1.3 /REP_DB=WormBase Gene ID /WP=CE09990 /TR=Q93696 /GB=CAB02289.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=glutathione S-transferase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064460(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064460 NCBI Caenorhabditis elegans Glutathione S-Transferase family member (gst-14) (gst-14) mRNA, complete cds. 11/11 None
SNAP00000041642 ENSEMBL cdna:SNAP chromosome:CEL140:II:13614747:13615994:-1 11/11 None
GENEFINDER00000041657 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:13614747:13615994:-1 11/11 None
F37B1.3 ENSEMBL cdna:known chromosome:CEL140:II:13614747:13615994:-1 gene:F37B1.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:13614743-13615991(-) 100.0 100.0
Public Domain and Genome References
Gene Title glutathione S-transferase
Gene Symbol gst-14
Ensembl F37B1.3
Entrez Gene 185409 Entrez gene
SwissProt Q93696 EMBL-EBI
WormBase CE09990 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02289 Hypothetical protein F37B1.3 [Caenorhabditis elegans] ref|NP_496861.1| Glutathione S-Transferase family member (gst-14) [Caenorhabditis elegans] 1.0E-116
blast CAB02288 Hypothetical protein F37B1.2 [Caenorhabditis elegans] ref|NP_496862.1| Glutathione S-Transferase family member (gst-12) [Caenorhabditis elegans] 1.0E-93
blast CAE73252 Hypothetical protein CBG20668 [Caenorhabditis briggsae] 9.0E-78
Protein Domains
Database ID Description E-Value
Pfam IPR004046 EMBL-EBI Glutathione S-transferase, C-terminal 2.8E-12
Pfam IPR004045 EMBL-EBI Glutathione S-transferase, N-terminal 1.1E-19
Sequence
Target Sequence 
>C. ELEGANS:190929_AT
caagctgtcttatttcccagttcgtggtctagccgagtcagccagacttttattccatct
tgccggagttccgtttgaggatgaacgggtgaactttttggatgacacctgggagaagat
gaaaggcaaaaccccaatgggacaattgcctgtcctcaccgtcgatgacttcgaaatccc
acaatctgctgccataaatcgctaccttgctagaaaattcgggttcgctggaaaaactcc
agaggaagaagcttgggtagacgccgtcgtcgatcaattcaaagatttctttgcggaatt
cagaaaactagtcattgcaaaacgagtcggaaaatctgctgaagaactggaaaagttaac
ggctgaagttataaaacctgctatggatgtgtacttcaaagttctcaatggcctactgga
aaagagcaagtcaggatatctgatcggagattcaatcaccttcgcggatctttatatcgc
tgacaacattcaaacactgaaaaaatatgggctcctagaagcttctggagagcaaccaaa
actagcagctcatctcgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAAGCTGTCTTATTTCCCAGTTCGT 56 187 24 Antisense
GTCAGCCAGACTTTTATTCCATCTT 148 465 60 Antisense
GAACTTTTTGGATGACACCTGGGAG 490 349 114 Antisense
AATGGGACAATTGCCTGTCCTCACC 588 163 159 Antisense
TCTGCTGCCATAAATCGCTACCTTG 426 609 208 Antisense
AAACCTGCTATGGATGTGTACTTCA 676 125 397 Antisense
CAAAGTTCTCAATGGCCTACTGGAA 180 181 420 Antisense
TCGGAGATTCAATCACCTTCGCGGA 230 605 467 Antisense
CCTTCGCGGATCTTTATATCGCTGA 50 271 482 Antisense
ATATGGGCTCCTAGAAGCTTCTGGA 319 21 528 Antisense
ACCAAAACTAGCAGCTCATCTCGAA 255 83 558 Antisense
Sequence Source Affymetrix Proprietary Database