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[190927_at] ATP/GTP-binding protein

Description C47C12.4 /REP_DB=WormBase Gene ID /WP=CE08797 /TR=Q94180 /GB=AAB07572.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=ATP-GTP-binding protein
Cluster 6grp_total > 84      4grp_total > 13      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 76
1 2 3 4 range
A 120.2
(1.4)
A 		93.6
(-1.8)
A 		83.2
(-3)
A 		133.2
(3)
A 		50
B 96.1
(2.5)
A 		65.7
(-3)
A 		78
(-0.8)
A 		98.9
(3)
A 		33
C 87.3
(-3)
A 		108.9
(-0.6)
A 		88.8
(-2.8)
A 		142
(3)
A 		55
avr 101.2
(-0.4) 		89.4
(-2.1) 		83.3
(-3) 		124.7
(3) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 116
1 2 3 4 5 6 range
A 34
(-3)
A 		71.2
(-1.1)
A 		65
(-1.4)
A 		149.7
(3)
A 		143.9
(2.7)
A 		104.8
(0.7)
A 		116
B 63.2
(-3)
A 		85.4
(0.2)
A 		81.6
(-0.3)
A 		87.5
(0.5)
A 		75.2
(-1.3)
A 		104.6
(3)
A 		41
C 84.2
(-3)
A 		87.7
(-2.3)
A 		113.1
(3)
A 		108
(1.9)
A 		109.1
(2.2)
A 		112.3
(2.8)
A 		29
avr 60.5
(-3) 		81.4
(-0.7) 		86.6
(-0.1) 		115.1
(3) 		109.4
(2.4) 		107.2
(2.1) 		55
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 43.8
(3)
A 		20.3
(-2.8)
A 		21.8
(-2.4)
A 		19.5
(-3)
A 		24
B 30.6
(3)
A 		16.2
(-3)
A 		18.1
(-2.2)
A 		21.1
(-1)
A 		14
C 28.9
(1.1)
A 		31.3
(3)
A 		30.9
(2.7)
A 		23.9
(-3)
A 		7
avr 34.4
(3) 		22.6
(-2.5) 		23.6
(-2) 		21.5
(-3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 6.3
(-3)
A 		25.3
(0.1)
A 		14.2
(-1.7)
A 		38
(2.1)
A 		43.4
(3)
A 		25.5
(0.1)
A 		37
B 22
(-2.3)
A 		28.4
(-0.3)
A 		19.8
(-3)
A 		23.2
(-1.9)
A 		30.6
(0.4)
A 		39
(3)
A 		19
C 31.2
(0.6)
A 		26.8
(-1.1)
A 		28.8
(-0.3)
A 		21.7
(-3)
A 		35.3
(2.1)
A 		37.6
(3)
A 		16
avr 19.8
(-3) 		26.8
(-0.5) 		20.9
(-2.6) 		27.6
(-0.2) 		36.4
(3) 		34
(2.1) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190927_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16576
Sequence Type Exemplar sequence
Representative Public ID C47C12.4 NCBI
Target Description C47C12.4 /REP_DB=WormBase Gene ID /WP=CE08797 /TR=Q94180 /GB=AAB07572.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=ATP-GTP-binding protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076909(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076909 NCBI Caenorhabditis elegans C47C12.4 (C47C12.4) mRNA, complete cds. 11/11 A 
SNAP00000037134 ENSEMBL cdna:SNAP chromosome:CEL140:X:7756640:7758093:-1 11/11 None
GENEFINDER00000037140 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:7756640:7758017:-1 11/11 None
C47C12.4 ENSEMBL cdna:known chromosome:CEL140:X:7756640:7758093:-1 gene:C47C12.4 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_058778 7/11 Cross Hyb Matching Probes A 
GENEFINDER00000034074 7/11 Cross Hyb Matching Probes None
SNAP00000033990 7/11 Cross Hyb Matching Probes None
Y47G6A.27 7/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:3555711-3557402(+) 98.83 98.83
chrX:7756638-7758092(-) 100.0 100.0
chrIV:4713041-4715574(-) 95.82 95.82
Public Domain and Genome References
Gene Title ATP/GTP-binding protein
Ensembl C47C12.4
Entrez Gene 183540 Entrez gene
SwissProt Q94180 EMBL-EBI
WormBase CE08797 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7264 small GTPase mediated signal transduction inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5509 calcium ion binding inferred from electronic annotation QuickGO AmiGO
5525 GTP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB07572 Hypothetical protein C47C12.4 [Caenorhabditis elegans] ref|NP_509310.1| C47C12.4 [Caenorhabditis elegans] 0.0
blast NP_491179 Y47G6A.27 [Caenorhabditis elegans] gb|AAK29889.1| Hypothetical protein Y47G6A.27 [Caenorhabditis elegans] 0.0
blast AAB09163 Hypothetical protein K08F11.5 [Caenorhabditis elegans] ref|NP_500620.1| K08F11.5 [Caenorhabditis elegans] 1.0E-130
Protein Domains
Database ID Description E-Value
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 6.3E-5
Pfam IPR001806 EMBL-EBI Ras GTPase superfamily 8.9E-9
Sequence
Target Sequence 
>C. ELEGANS:190927_AT
tcctctatgatgtctcgaatcccgattcattcgcgttctgcgccacagtttatcagaaat
atttctatagaacaaaaacgccgtgtgtcatgattgccacaaaagttgaacgggaagaag
ttgaccagcgttgggaagtgccgccgaaggaattctgtagacaatttgagctcccgaaac
caatcaagttctcgacg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCTCTATGATGTCTCGAATCCCGA 621 591 839 Antisense
TATGATGTCTCGAATCCCGATTCAT 253 657 844 Antisense
ATGTCTCGAATCCCGATTCATTCGC 324 47 848 Antisense
AGAACAAAAACGCCGTGTGTCATGA 251 73 907 Antisense
AAACGCCGTGTGTCATGATTGCCAC 1 127 914 Antisense
GCCGTGTGTCATGATTGCCACAAAA 649 283 918 Antisense
CAGCGTTGGGAAGTGCCGCCGAAGG 64 203 964 Antisense
GTTGGGAAGTGCCGCCGAAGGAATT 500 433 968 Antisense
ATTTGAGCTCCCGAAACCAATCAAG 617 17 1002 Antisense
GAGCTCCCGAAACCAATCAAGTTCT 704 381 1006 Antisense
CCCGAAACCAATCAAGTTCTCGACG 419 229 1011 Antisense
Sequence Source Affymetrix Proprietary Database