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[190926_s_at] Putative membrane protein

Description C37A5.1 /REP_DB=WormBase Gene ID /WP=CE17528 /TR=O62095 /GB=CAB07337.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Putative membrane protein
Cluster 6grp_total > 22      4grp_total > 26      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 106
1 2 3 4 range
A 96.6
(-2.8)
A 		108.8
(3)
P 		96.1
(-3)
A 		97.6
(-2.3)
P 		13
B 82.8
(-3)
A 		151.6
(2.6)
P 		148.4
(2.4)
P 		155.9
(3)
A 		73
C 112.6
(-1.4)
M 		136.3
(-0)
P 		84.3
(-3)
P 		189.1
(3)
P 		105
avr 97.3
(-3) 		132.2
(1.2) 		109.6
(-1.5) 		147.5
(3) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 69
1 2 3 4 5 6 range
A 79.1
(0)
A 		107.2
(3)
P 		74.5
(-0.5)
P 		70.9
(-0.8)
A 		50.6
(-3)
A 		75.3
(-0.4)
A 		57
B 66.9
(-0.6)
M 		108.6
(3)
A 		108.4
(3)
P 		74
(-0)
A 		39.8
(-3)
A 		44.4
(-2.6)
A 		69
C 83
(3)
A 		73.1
(1.2)
A 		70.1
(0.6)
P 		80.9
(2.6)
A 		50.5
(-3)
A 		65.9
(-0.2)
A 		33
avr 76.3
(0.6) 		96.3
(3) 		84.3
(1.5) 		75.3
(0.4) 		47
(-3) 		61.9
(-1.2) 		49
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 35.2
(3)
A 		23.6
(-0.3)
P 		25.1
(0.1)
A 		14.3
(-3)
P 		21
B 26.4
(-3)
A 		37.5
(3)
P 		34.4
(1.3)
P 		33.2
(0.7)
A 		11
C 37.3
(1.8)
M 		39.2
(3)
P 		29.4
(-3)
P 		31.9
(-1.5)
P 		10
avr 33
(2.7) 		33.4
(3) 		29.6
(-0.3) 		26.5
(-3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 14.6
(-3)
A 		38.1
(3)
P 		16.2
(-2.6)
P 		18
(-2.1)
A 		15.3
(-2.8)
A 		18.3
(-2.1)
A 		24
B 23.3
(-0.9)
M 		36.2
(3)
A 		26.3
(0)
P 		19.6
(-2)
A 		16.2
(-3)
A 		16.6
(-2.9)
A 		20
C 30.8
(3)
A 		22.3
(-0.5)
A 		17.8
(-2.4)
P 		16.3
(-3)
A 		16.4
(-3)
A 		22
(-0.6)
A 		15
avr 22.9
(-0.4) 		32.2
(3) 		20.1
(-1.5) 		18
(-2.3) 		16
(-3) 		19
(-1.9) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 190926_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.961
Sequence Type Exemplar sequence
Representative Public ID C37A5.1 NCBI
Target Description C37A5.1 /REP_DB=WormBase Gene ID /WP=CE17528 /TR=O62095 /GB=CAB07337.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Putative membrane protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061071(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061071 NCBI Caenorhabditis elegans C37A5.1 (C37A5.1) mRNA, complete cds. 11/11 A 
GENEFINDER00000011863 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:14166424:14169778:-1 9/11 None
C37A5.1.1 ENSEMBL cdna:known chromosome:CEL140:I:14166633:14169782:-1 gene:C37A5.1 11/11 None
C37A5.1.2 ENSEMBL cdna:known chromosome:CEL140:I:14166633:14169836:-1 gene:C37A5.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:14166563-14169709(-) 100.0 100.0
Public Domain and Genome References
Gene Title Putative membrane protein
Ensembl C37A5.1
Entrez Gene 173285 Entrez gene
SwissProt O62095 EMBL-EBI
WormBase CE17528 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07337 Hypothetical protein C37A5.1 [Caenorhabditis elegans] ref|NP_493472.1| C37A5.1 [Caenorhabditis elegans] 0.0
blast CAE71802 Hypothetical protein CBG18813 [Caenorhabditis briggsae] 0.0
blast CAE71802 Hypothetical protein CBG18813 [Caenorhabditis briggsae] 1.0E-169
blast CAE68089 Hypothetical protein CBG13726 [Caenorhabditis briggsae] 3.0E-94
Protein Domains
Database ID Description E-Value
Pfam IPR000615 EMBL-EBI Bestrophin 1.0E-126
Pfam IPR000615 EMBL-EBI Bestrophin 1.1E-85
Pfam IPR000615 EMBL-EBI Bestrophin 2.6E-101
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493472.1 4 32-54,75-94,227-249,268-285
C37A5.1.1 4 32-54,75-94,227-249,268-285
C37A5.1.2 4 32-54,75-94,227-249,268-285
GENEFINDER00000011863 4 32-54,75-94,244-266,285-302
Sequence
Target Sequence 
>C. ELEGANS:190926_S_AT
acaggaatggctatcgtcaactcgaagtattctgatgtgccagaaatgttggctgacaag
ttcaacgatccatcctatgcaccatactacccggagaaggttatcgactcgggagccgat
cacgcgttggtgggatccgcgcagactgtgacattagccgagccgaatgacatcatcgac
atgatgaaggtcgacttgaactctccgattgttgtgggaagaagaaacaccaacaacacc
tccaccatccgccgcagactttcctctgcttttggcaggcggagccactctgtgcaacac
ctgggcccggagaagcctgaacccacaagcccattctcccaatccatggctccacagcgg
ccctatggagcttttgagctatcgaatgggttcaatttgtctggactgtcgggcataact
tctcagagtcatttgccgaagcttgaagaggagtcggagacaactgatccactgccagct
cagcaaccagtatttgtgcttcctaggacactcagtgaagaacctacaagccccaccttg
ccgtttgatcagactctggagcacgtcgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACAGGAATGGCTATCGTCAACTCGA 488 107 952 Antisense
AAGTTCAACGATCCATCCTATGCAC 464 155 1009 Antisense
CTATGCACCATACTACCCGGAGAAG 312 225 1026 Antisense
TTATCGACTCGGGAGCCGATCACGC 193 681 1052 Antisense
CCGATCACGCGTTGGTGGGATCCGC 5 265 1067 Antisense
ATTAGCCGAGCCGAATGACATCATC 290 13 1104 Antisense
GAAGGTCGACTTGAACTCTCCGATT 545 333 1137 Antisense
GAACTCTCCGATTGTTGTGGGAAGA 389 349 1149 Antisense
CTTTCCTCTGCTTTTGGCAGGCGGA 495 223 1210 Antisense
CTTGCCGTTTGATCAGACTCTGGAG 266 219 1488 Antisense
TGATCAGACTCTGGAGCACGTCGAT 342 563 1497 Antisense
Sequence Source Affymetrix Proprietary Database