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[190922_s_at]

Description F39B2.4A /REP_DB=WormBase Gene ID /WP=CE28023 /GEN=sur-2 /TR=O45497 /GB=CAB07385.2 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=SUR-2 PROTEIN
Cluster 6grp_highest_10_10 > 63      6grp_high1_10_10 > 36      4grp_highest_8_8 > 54      4grp_high_8_8 > 10      6grp_highest_nonorm > 70      6grp_total > 36      4grp_total > 22      6grp_highest_sub > Cu      6grp_cgc > 16      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 230
1 2 3 4 range
A 403.6
(3)
P 		324.8
(0.7)
P 		202.2
(-3)
P 		383.5
(2.4)
P 		201
B 342.2
(-1.1)
P 		311.2
(-2.8)
P 		307.8
(-3)
P 		417
(3)
P 		109
C 431.9
(3)
P 		261.5
(-1.6)
P 		211
(-3)
P 		411.3
(2.4)
P 		221
avr 392.6
(2.6) 		299.2
(-0.8) 		240.3
(-3) 		403.9
(3) 		164

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 303
1 2 3 4 5 6 range
A 486.7
(3)
P 		371.7
(0.6)
P 		245.2
(-1.9)
P 		193.4
(-3)
P 		232.8
(-2.2)
P 		342.6
(0.1)
P 		293
B 390.8
(3)
P 		359.6
(2.1)
P 		288.9
(0)
P 		264.5
(-0.7)
P 		184.1
(-3)
P 		352.5
(1.9)
P 		207
C 317
(1.2)
P 		322
(1.3)
P 		295.8
(0.4)
P 		242.6
(-1.6)
P 		203.4
(-3)
P 		367.2
(3)
P 		164
avr 398.2
(3) 		351.1
(1.5) 		276.6
(-0.8) 		233.5
(-2.2) 		206.8
(-3) 		354.1
(1.6) 		191
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 94
1 2 3 4 range
A 147
(3)
P 		70.5
(-1.9)
P 		52.9
(-3)
P 		56.1
(-2.8)
P 		94
B 109.1
(3)
P 		76.9
(-2.1)
P 		71.3
(-3)
P 		88.9
(-0.2)
P 		38
C 143
(3)
P 		75.2
(-2.5)
P 		73.5
(-2.7)
P 		69.3
(-3)
P 		74
avr 133
(3) 		74.2
(-2.3) 		65.9
(-3) 		71.4
(-2.5) 		67

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 87
1 2 3 4 5 6 range
A 89.7
(-0.1)
P 		132.2
(3)
P 		53.4
(-2.7)
P 		49
(-3)
P 		70.2
(-1.5)
P 		83.4
(-0.5)
P 		83
B 136
(3)
P 		119.7
(1.5)
P 		70.1
(-3)
P 		70.1
(-3)
P 		74.8
(-2.6)
P 		131.5
(2.6)
P 		66
C 117.5
(2.6)
P 		98.2
(1)
P 		75.3
(-0.9)
P 		48.8
(-3)
P 		65.8
(-1.6)
P 		122.9
(3)
P 		74
avr 114.4
(2.8) 		116.7
(3) 		66.3
(-2) 		56
(-3) 		70.3
(-1.6) 		112.6
(2.6) 		61
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 190922_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1814
Sequence Type Exemplar sequence
Representative Public ID F39B2.4A NCBI
Target Description F39B2.4A /REP_DB=WormBase Gene ID /WP=CE28023 /GEN=sur-2 /TR=O45497 /GB=CAB07385.2 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=SUR-2 PROTEIN
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026292(11), NM_061174(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026292 NCBI Caenorhabditis elegans SUppressor of activated let-60 Ras family member (sur-2) (sur-2) mRNA, complete cds. 11/11 None
NM_061174 NCBI Caenorhabditis elegans SUppressor of activated let-60 Ras family member (sur-2) (sur-2) mRNA, complete cds. 11/11 A 
SNAP00000018504 ENSEMBL cdna:SNAP chromosome:CEL140:I:14785395:14795914:-1 11/11 None
GENEFINDER00000018516 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:14785395:14791997:-1 11/11 None
F39B2.4b ENSEMBL cdna:known chromosome:CEL140:I:14785323:14795914:-1 gene:F39B2.4 11/11 A 
F39B2.4a ENSEMBL cdna:known chromosome:CEL140:I:14785395:14795914:-1 gene:F39B2.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:14785325-14795845(-) 98.42 100.0
Public Domain and Genome References
Ensembl F39B2.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07394 Hypothetical protein F39B2.4b [Caenorhabditis elegans] ref|NP_001021463.1| SUppressor of activated let-60 Ras family member (sur-2) [Caenorhabditis elegans] 0.0
blast CAB07385 Hypothetical protein F39B2.4a [Caenorhabditis elegans] ref|NP_493575.2| SUppressor of activated let-60 Ras family member (sur-2) [Caenorhabditis elegans] sp|Q10669|SUR2_CAEEL Protein sur-2 gb|AAA85507.1| sur-2 gene product 0.0
blast T21993 hypothetical protein F39B2.4b - Caenorhabditis elegans 0.0
blast T21986 hypothetical protein F39B2.4a - Caenorhabditis elegans 0.0
Sequence
Target Sequence 
>C. ELEGANS:190922_S_AT
tgcagagcaggaaacaccaccggaaaaggaaaaatcaccggaaaaagagaaggagcagga
acaagagcaacatgtcaaagctcaccaacctctcgaatcaacaccttccgtttcctcact
accgcaaatgcaacatcatctacaacaagcaccactactaccatcacatcaaatgatgcc
tccaccacaacaacattcatcctcacttcaacatcatctacaacatcatacatctacaca
tcaaatgatggatacatcacaacatcagacaattcaacaacaatcaaatcatcctactca
acaacaacttcaacatcaaattccgaatatgtcgatgcatcaacaaatgggacctcaata
tcctggtgcagtttttcatcatccatctggacctgtgggacatgtcccaatgcaatatgg
aatgggacatcatatgcaacagcacccacatcttccacatcatcagcaaatgccggcacc
tatgcatacaatgaatcctatgatgcaaaacatgactcctcaacagcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCAGAGCAGGAAACACCACCGGAA 87 577 4371 Antisense
TTCCTCACTACCGCAAATGCAACAT 600 699 4482 Antisense
ATCATCTACAACATCATACATCTAC 6 31 4583 Antisense
CAAATCATCCTACTCAACAACAACT 474 193 4655 Antisense
ACAACTTCAACATCAAATTCCGAAT 335 109 4674 Antisense
ATGGGACCTCAATATCCTGGTGCAG 397 49 4717 Antisense
ATCCTGGTGCAGTTTTTCATCATCC 522 39 4730 Antisense
CATCCATCTGGACCTGTGGGACATG 178 211 4750 Antisense
ATCATATGCAACAGCACCCACATCT 236 29 4799 Antisense
ATCAGCAAATGCCGGCACCTATGCA 247 27 4832 Antisense
GCAAAACATGACTCCTCAACAGCAA 301 319 4875 Antisense
Sequence Source Affymetrix Proprietary Database