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[190919_at] bithoraxoid-like protein

Description T24H10.6 /REP_DB=WormBase Gene ID /WP=CE03731 /TR=Q22752 /GB=CAA90946.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=bithoraxoid-like protein
Cluster 6grp_highest_10_10 > 75      6grp_high1_10_10 > 66      4grp_highest_8_8 > 23      4grp_high_8_8 > 13      6grp_highest_nonorm > 85      6grp_total > 57      4grp_total > 02      6grp_highest_sub > Cu      6grp_cgc > 36      6grp_high1_sub > Da      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1052
1 2 3 4 range
A 651.1
(-3)
P 		704.4
(-2.6)
P 		646
(-3)
P 		1537.7
(3)
P 		892
B 706.8
(-2.7)
P 		682.9
(-2.8)
P 		657.8
(-3)
P 		1635.5
(3)
P 		978
C 751.4
(-2.2)
P 		736.4
(-2.3)
P 		612.5
(-3)
P 		1664.4
(3)
P 		1052
avr 703.1
(-2.6) 		707.9
(-2.6) 		638.8
(-3) 		1612.5
(3) 		974

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 330
1 2 3 4 5 6 range
A 817.4
(2.9)
P 		770.5
(1.5)
P 		755.7
(1.1)
P 		822.3
(3)
P 		612.7
(-3)
P 		710.2
(-0.2)
P 		210
B 647.5
(-3)
P 		718.5
(-0.6)
P 		801.8
(2.3)
P 		678.3
(-2)
P 		823.6
(3)
P 		725.6
(-0.3)
P 		176
C 859.2
(1.1)
P 		678
(-3)
P 		728.5
(-1.9)
P 		799.4
(-0.3)
P 		752.6
(-1.3)
P 		942.9
(3)
P 		265
avr 774.7
(1.5) 		722.3
(-3) 		762
(0.4) 		766.7
(0.8) 		729.6
(-2.4) 		792.9
(3) 		71
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 196
1 2 3 4 range
A 237.1
(3)
P 		152.9
(-3)
P 		168.9
(-1.9)
P 		225.1
(2.1)
P 		84
B 225.4
(-0.8)
P 		168.7
(-2.5)
P 		152.4
(-3)
P 		348.5
(3)
P 		196
C 248.7
(0.2)
P 		211.7
(-3)
P 		213.5
(-2.8)
P 		280.6
(3)
P 		69
avr 237.1
(0.3) 		177.8
(-3) 		178.3
(-3) 		284.7
(3) 		107

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 184
1 2 3 4 5 6 range
A 150.7
(-3)
P 		274
(3)
P 		164.6
(-2.3)
P 		208.6
(-0.2)
P 		184.9
(-1.3)
P 		172.9
(-1.9)
P 		123
B 225.3
(-1.2)
P 		239.2
(-0.7)
P 		194.7
(-2.4)
P 		179.7
(-3)
P 		334.6
(3)
P 		270.6
(0.5)
P 		155
C 318.5
(3)
P 		206.9
(-1.2)
P 		185.4
(-2.1)
P 		160.8
(-3)
P 		243.5
(0.1)
P 		315.7
(2.9)
P 		158
avr 231.5
(1.1) 		240
(1.8) 		181.6
(-3) 		183
(-2.9) 		254.3
(3) 		253.1
(2.9) 		73
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190919_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3376
Sequence Type Exemplar sequence
Representative Public ID T24H10.6 NCBI
Target Description T24H10.6 /REP_DB=WormBase Gene ID /WP=CE03731 /TR=Q22752 /GB=CAA90946.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=bithoraxoid-like protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063542(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063542 NCBI Caenorhabditis elegans DYnein light chain (RoadBlock type) family member (dyrb-1) (dyrb-1) mRNA, complete cds. 11/11 None
SNAP00000021890 ENSEMBL cdna:SNAP chromosome:CEL140:II:9106533:9107054:-1 11/11 None
GENEFINDER00000021903 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:9106533:9107054:-1 11/11 None
T24H10.6 ENSEMBL cdna:known chromosome:CEL140:II:9106423:9107054:-1 gene:T24H10.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9106529-9107051(-) 100.0 100.0
Public Domain and Genome References
Gene Title bithoraxoid-like protein
Gene Symbol dyrb-1
Ensembl T24H10.6
Entrez Gene 188872 Entrez gene
SwissProt Q22752 EMBL-EBI
WormBase CE03731 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1583962_AT similar to dynein, cytoplasmic, light chain 2A cfa
CANINE_2:CFA.12410.1.A1_AT similar to dynein, cytoplasmic, light chain 2A cfa
CANINE_2:CFAAFFX.11025.1.S1_AT similar to dynein, cytoplasmic, light chain 2A cfa
CANINE_2:CFAAFFX.12186.1.S1_X_AT similar to dynein, cytoplasmic, light chain 2A cfa
CHICKEN:GGA.5559.1.S1_AT dynein, cytoplasmic, light polypeptide 2A gga
HG-U133_PLUS_2:217917_S_AT dynein, cytoplasmic, light polypeptide 2A hs
HG-U133A:217917_S_AT dynein, cytoplasmic, light polypeptide 2A hs
HG-U133A_2:217917_S_AT dynein, cytoplasmic, light polypeptide 2A hs
HG-U133_PLUS_2:217918_AT dynein, cytoplasmic, light polypeptide 2A hs
HG-U133A:217918_AT dynein, cytoplasmic, light polypeptide 2A hs
HG-U133A_2:217918_AT dynein, cytoplasmic, light polypeptide 2A hs
HU35KSUBA:AA430258_AT dynein, cytoplasmic, light polypeptide 2A hs
HU35KSUBD:RC_AA236714_F_AT dynein, cytoplasmic, light polypeptide 2A hs
HU35KSUBD:RC_D80754_F_AT dynein, cytoplasmic, light polypeptide 2A hs
U133_X3P:G7661821_3P_S_AT dynein, cytoplasmic, light polypeptide 2A hs
U133_X3P:G7661821_3P_AT dynein, cytoplasmic, light polypeptide 2A hs
U133_X3P:HS2.100002.3.S1_3P_AT dynein, cytoplasmic, light polypeptide 2A hs
HG-U133_PLUS_2:1554568_AT dynein, cytoplasmic, light polypeptide 2A hs
HG-U95C:48776_AT dynein, cytoplasmic, light polypeptide 2A hs
U133_X3P:HS2.377072.1.A1_3P_AT Dynein, cytoplasmic, light polypeptide 2A hs
HG-U133_PLUS_2:1565611_AT Dynein, cytoplasmic, light polypeptide 2A hs
HG-U133_PLUS_2:1565612_AT Dynein, cytoplasmic, light polypeptide 2A hs
HG-U95D:77569_AT Dynein, cytoplasmic, light polypeptide 2A hs
HG-U95D:88659_AT Dynein, cytoplasmic, light polypeptide 2A hs
MG-U74AV2:94863_R_AT dynein, cytoplasmic, light chain 2A mm
MG-U74AV2:94862_I_AT dynein, cytoplasmic, light chain 2A mm
MOE430A:1428257_S_AT dynein, cytoplasmic, light chain 2A mm
MOUSE430A_2:1428257_S_AT dynein, cytoplasmic, light chain 2A mm
MOUSE430_2:1428257_S_AT dynein, cytoplasmic, light chain 2A mm
MU19KSUBB:TC26344_AT Dynein, cytoplasmic, light chain 2A (Dncl2a), mRNA mm
MU19KSUBB:TC26344_G_AT Dynein, cytoplasmic, light chain 2A (Dncl2a), mRNA mm
RG-U34A:AF073839_S_AT dynein, cytoplasmic, light chain 2A rn
RAE230A:1370179_AT dynein, cytoplasmic, light chain 2A rn
RAT230_2:1370179_AT dynein, cytoplasmic, light chain 2A rn
Protein Similarities
Method ID Description E-Value
blast CAA90946 Hypothetical protein T24H10.6 [Caenorhabditis elegans] ref|NP_495943.1| DYnein light chain (RoadBlock type) family member (dyrb-1) [Caenorhabditis elegans] 4.0E-46
blast CAE59802 Hypothetical protein CBG03264 [Caenorhabditis briggsae] 7.0E-46
blast AAH74416 MGC84432 protein [Xenopus laevis] 7.0E-22
Protein Domains
Database ID Description E-Value
Pfam IPR004942 EMBL-EBI Roadblock/LC7 family 5.1E-27
Sequence
Target Sequence 
>C. ELEGANS:190919_AT
tcgaggagactattcgccgtctacagtcagagaaaggagtcgttggaattattgttgtcg
attcagccggccgagttattcattcgacaatcgacagcgacgccacccagtctcacaccg
cattcctgcagcagttatgtgagaagacaaagacttccattcgtgaactcgattcgagca
atgatctaacattcctgaggcttcgaacgaagaagaacgaaatcatgattgctccagaca
agg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGAGGAGACTATTCGCCGTCTACA 374 603 23 Antisense
CTATTCGCCGTCTACAGTCAGAGAA 35 225 32 Antisense
GGAGTCGTTGGAATTATTGTTGTCG 444 515 58 Antisense
TCGATTCAGCCGGCCGAGTTATTCA 361 603 80 Antisense
AGCCGGCCGAGTTATTCATTCGACA 250 83 87 Antisense
ATTCGACAATCGACAGCGACGCCAC 225 9 104 Antisense
ACACCGCATTCCTGCAGCAGTTATG 459 109 137 Antisense
ACTTCCATTCGTGAACTCGATTCGA 290 103 175 Antisense
AACTCGATTCGAGCAATGATCTAAC 620 141 188 Antisense
ATGATCTAACATTCCTGAGGCTTCG 241 47 203 Antisense
GAAATCATGATTGCTCCAGACAAGG 390 361 241 Antisense
Sequence Source Affymetrix Proprietary Database