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[190916_at] UDP-glucosyltransferase

Description C23G10.6 /REP_DB=WormBase Gene ID /WP=CE04052 /TR=Q9GYR7 /GB=AAF99874.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=UDP-glucosyltransferase
Cluster 6grp_highest_10_10 > 77      6grp_high1_10_10 > 77      6grp_highest_nonorm > 98      6grp_total > 77      4grp_total > 17      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4073
1 2 3 4 range
A 57
(-3)
A 		776.1
(-1.8)
P 		1168.3
(-1.2)
P 		3697.6
(3)
P 		3641
B 11.8
(-3)
A 		876
(-1.7)
P 		1090.1
(-1.4)
P 		4084.6
(3)
P 		4073
C 44.5
(-3)
A 		828.2
(-1.8)
P 		1072.9
(-1.4)
P 		3952.8
(3)
P 		3908
avr 37.8
(-3) 		826.8
(-1.8) 		1110.4
(-1.3) 		3911.7
(3) 		3874

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1426
1 2 3 4 5 6 range
A 647.7
(-3)
P 		852.7
(-2)
P 		662.1
(-2.9)
P 		861.2
(-2)
P 		1002.2
(-1.3)
P 		1906.1
(3)
P 		1258
B 648.2
(-2.9)
P 		805.3
(-2.1)
P 		619.7
(-3)
P 		818.1
(-2)
P 		1025.6
(-1)
P 		1860.1
(3)
P 		1240
C 553.1
(-3)
P 		751.2
(-2.2)
P 		664.6
(-2.5)
P 		890.9
(-1.6)
P 		1056
(-0.9)
P 		1979.2
(3)
P 		1426
avr 616.3
(-3) 		803.1
(-2.1) 		648.8
(-2.8) 		856.7
(-1.9) 		1027.9
(-1.1) 		1915.1
(3) 		1299
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 867
1 2 3 4 range
A 20.8
(-3)
A 		168.5
(-1.3)
P 		305.4
(0.3)
P 		541.3
(3)
P 		521
B 3.8
(-3)
A 		216.3
(-1.5)
P 		252.6
(-1.3)
P 		870.4
(3)
P 		867
C 14.7
(-3)
A 		238.1
(-0.9)
P 		373.9
(0.3)
P 		666.5
(3)
P 		652
avr 13.1
(-3) 		207.6
(-1.3) 		310.6
(-0.4) 		692.7
(3) 		680

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 574
1 2 3 4 5 6 range
A 119.4
(-3)
P 		303.3
(0.2)
P 		144.2
(-2.6)
P 		218.4
(-1.3)
P 		302.4
(0.2)
P 		464.1
(3)
P 		345
B 225.5
(-2.2)
P 		268
(-1.7)
P 		150.5
(-3)
P 		216.7
(-2.3)
P 		416.7
(-0.1)
P 		693.6
(3)
P 		543
C 205
(-2.6)
P 		229.2
(-2.3)
P 		169.2
(-3)
P 		179.2
(-2.9)
P 		341.7
(-0.9)
P 		662.6
(3)
P 		493
avr 183.3
(-2.6) 		266.8
(-1.5) 		154.6
(-3) 		204.8
(-2.3) 		353.6
(-0.4) 		606.8
(3) 		452
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190916_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6175
Sequence Type Exemplar sequence
Representative Public ID C23G10.6 NCBI
Target Description C23G10.6 /REP_DB=WormBase Gene ID /WP=CE04052 /TR=Q9GYR7 /GB=AAF99874.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=UDP-glucosyltransferase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065943(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065943 NCBI Caenorhabditis elegans C23G10.6 (UDP-glucosyltransferase) mRNA, complete cds. 11/11 None
SNAP00000025613 ENSEMBL cdna:SNAP chromosome:CEL140:III:6192121:6192954:-1 11/11 None
GENEFINDER00000025636 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:6192121:6195039:-1 11/11 None
C23G10.6 ENSEMBL cdna:known chromosome:CEL140:III:6192121:6194603:-1 gene:C23G10.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:6192119-6194602(-) 100.0 100.0
Public Domain and Genome References
Gene Title UDP-glucosyltransferase
Ensembl C23G10.6
Entrez Gene 182814 Entrez gene
SwissProt Q9GYR7 EMBL-EBI
WormBase CE04052 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16758 transferase activity, transferring hexosyl groups inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF99874 Hypothetical protein C23G10.6 [Caenorhabditis elegans] ref|NP_498344.1| C23G10.6 [Caenorhabditis elegans] 0.0
blast CAE60367 Hypothetical protein CBG03966 [Caenorhabditis briggsae] 0.0
blast AAB42345 Udp-glucuronosyltransferase protein 27 [Caenorhabditis elegans] ref|NP_491436.1| C10H11.5 [Caenorhabditis elegans] 1.0E-156
blast AAF99874 Hypothetical protein C23G10.6 [Caenorhabditis elegans] ref|NP_498344.1| C23G10.6 [Caenorhabditis elegans] 1.0E-120
Protein Domains
Database ID Description E-Value
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 1.5E-10
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 3.1E-12
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 3.1E-12
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 1.5E-10
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 3.1E-12
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_498344.1 2 46-68,499-521
C23G10.6 2 46-68,499-521
SNAP00000025613 1 185-207
GENEFINDER00000025636 2 103-125,556-578
Sequence
Target Sequence 
>C. ELEGANS:190916_AT
ggttcctcaaacagccttactaaatgacgatcgtctcaccgctttcctgactcatggagg
actaggaagtactaatgaattggctcactggggtaaaccagcagtcacagttccaatatt
tggagatcaagtcagaaatgcaaatatgcttacaagacacaatggagctattttcgtatg
gaaaaatgatttgggaaactatggaattgtcaaggaagcagttcatcaaattctttataa
tgagaaatacaagaggaatgccaagtatttggcggatatactggagaatcaaccacatca
accaaaggatttggtggtgaagcatacagagtttttggcaaaatttggccccttcccaaa
aatggatccatacggccgcagtttgaactttttcaccagaaatcttttcgatatccatgc
tgctgtggtgttcacttatttcatacttgcaacggcttcatttaatat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTTCCTCAAACAGCCTTACTAAAT 521 59 1104 Antisense
TAAATGACGATCGTCTCACCGCTTT 277 641 1124 Antisense
ACCGCTTTCCTGACTCATGGAGGAC 286 89 1141 Antisense
GGGTAAACCAGCAGTCACAGTTCCA 251 497 1194 Antisense
GGAGAATCAACCACATCAACCAAAG 389 519 1386 Antisense
TGGCCCCTTCCCAAAAATGGATCCA 508 543 1449 Antisense
GATCCATACGGCCGCAGTTTGAACT 548 415 1468 Antisense
AATCTTTTCGATATCCATGCTGCTG 637 169 1504 Antisense
ATCCATGCTGCTGTGGTGTTCACTT 540 39 1516 Antisense
GGTGTTCACTTATTTCATACTTGCA 141 501 1530 Antisense
TACTTGCAACGGCTTCATTTAATAT 516 643 1547 Antisense
Sequence Source Affymetrix Proprietary Database