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[190912_at] 7TM chemoreceptor, srh family

Description K04F1.5 /REP_DB=WormBase Gene ID /WP=CE26375 /GEN=srh-3 /TR=Q9TXK6 /GB=AAC78161.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 11      4grp_total > 06      6grp_cgc > 62      6grp_cgc_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 130
1 2 3 4 range
A 90.2
(2.3)
A 		48.8
(-3)
A 		95.9
(3)
A 		93.4
(2.7)
A 		47
B 96.2
(3)
A 		38.5
(-3)
A 		42.7
(-2.6)
A 		40.3
(-2.8)
A 		58
C 48.6
(-3)
A 		49.7
(-2.9)
A 		57.1
(-2.6)
A 		168.9
(3)
M 		120
avr 78.3
(0.5) 		45.7
(-3) 		65.2
(-0.9) 		100.9
(3) 		55

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 110
1 2 3 4 5 6 range
A 50
(0.1)
A 		70.3
(1.5)
A 		90.9
(3)
A 		59.2
(0.8)
A 		8.7
(-2.8)
A 		6.3
(-3)
A 		85
B 62.9
(-2.7)
A 		112
(3)
A 		78.2
(-0.9)
A 		60
(-3)
A 		81.2
(-0.6)
A 		66.4
(-2.3)
A 		52
C 59.8
(-1.2)
A 		115.9
(3)
A 		41.4
(-2.5)
A 		70.4
(-0.4)
A 		53.1
(-1.7)
A 		35.1
(-3)
A 		81
avr 57.6
(-0.9) 		99.4
(3) 		70.2
(0.2) 		63.2
(-0.4) 		47.7
(-1.9) 		35.9
(-3) 		64
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 32.8
(3)
A 		10.6
(-3)
A 		25.1
(0.9)
A 		13.7
(-2.2)
A 		22
B 30.7
(3)
A 		9.5
(-2.8)
A 		9.9
(-2.6)
A 		8.6
(-3)
A 		22
C 16.1
(-2.2)
A 		14.3
(-3)
A 		19.9
(-0.6)
A 		28.5
(3)
M 		14
avr 26.5
(3) 		11.5
(-3) 		18.3
(-0.3) 		16.9
(-0.8) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 9.2
(-1)
A 		25
(3)
A 		19.8
(1.7)
A 		15
(0.4)
A 		2.6
(-2.7)
A 		1.5
(-3)
A 		24
B 21.9
(-1.3)
A 		37.3
(3)
A 		19
(-2.1)
A 		15.9
(-3)
A 		33
(1.8)
A 		24.8
(-0.5)
A 		21
C 22.2
(-0.2)
A 		35.4
(3)
A 		10.5
(-3)
A 		14.2
(-2.1)
A 		17.2
(-1.4)
A 		11.8
(-2.7)
A 		25
avr 17.8
(-1.5) 		32.6
(3) 		16.4
(-1.9) 		15
(-2.3) 		17.6
(-1.5) 		12.7
(-3) 		20
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190912_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15755
Sequence Type Exemplar sequence
Representative Public ID K04F1.5 NCBI
Target Description K04F1.5 /REP_DB=WormBase Gene ID /WP=CE26375 /GEN=srh-3 /TR=Q9TXK6 /GB=AAC78161.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071080(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071080 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-3) (srh-3) mRNA, complete cds. 11/11 None
SNAP00000011967 ENSEMBL cdna:SNAP chromosome:CEL140:V:1681852:1684918:1 11/11 None
K04F1.5 ENSEMBL cdna:known chromosome:CEL140:V:1682408:1684918:1 gene:K04F1.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:1682407-1684918(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srh family
Gene Symbol srh-3
Ensembl K04F1.5
Entrez Gene 191840 Entrez gene
SwissProt Q9TXK6 EMBL-EBI
WormBase CE26375 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC78161 Serpentine receptor, class h protein 3 [Caenorhabditis elegans] ref|NP_503481.1| Serpentine Receptor, class H family member (srh-3) [Caenorhabditis elegans] 0.0
blast AAC78161 Serpentine receptor, class h protein 3 [Caenorhabditis elegans] ref|NP_503481.1| Serpentine Receptor, class H family member (srh-3) [Caenorhabditis elegans] 1.0E-155
blast CAE62434 Hypothetical protein CBG06526 [Caenorhabditis briggsae] 1.0E-151
blast AAF39925 Serpentine receptor, class h protein 4 [Caenorhabditis elegans] ref|NP_504119.1| Serpentine Receptor, class H family member (srh-4) [Caenorhabditis elegans] 1.0E-148
blast CAE62434 Hypothetical protein CBG06526 [Caenorhabditis briggsae] 1.0E-123
blast AAF39925 Serpentine receptor, class h protein 4 [Caenorhabditis elegans] ref|NP_504119.1| Serpentine Receptor, class H family member (srh-4) [Caenorhabditis elegans] 1.0E-119
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503481.1 7 15-37,50-72,92-114,135-154,194-216,241-263,278-300
K04F1.5 7 15-37,50-72,92-114,135-154,194-216,241-263,278-300
SNAP00000011967 6 33-55,70-89,110-129,169-191,216-238,253-275
Sequence
Target Sequence 
>C. ELEGANS:190912_AT
cattgtctttgtgctcattctcacaatattgatttatccagatctgaagaaccaaagaga
ttataaaattcaaatggaaaagagattcggaacgttcaagccgtatatgtggtgtgacaa
ctgtttcttcatgaattttagttcgaaaatcttctatgtcttctttatcgttgccggaat
cgccgtggtcttgggtggtaccactggtggtattgcttttcatgtaacagttgaagcatt
gaaaagtgttagcttaaggctcactgctaaaacaaaagcgacacatcggaactatttaat
gagtctctcgttggcggcaggtgttcatgtcgtttgcattgtgttacccctgctaggcgt
tttatcggcaattaatgttatgatcagtttgagtaattttcgctatttcccattcatcct
cacactaatcatacaagaacatggtgctgcatctaccgtcatcatgttcatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATTGTCTTTGTGCTCATTCTCACA 633 217 441 Antisense
GTGGTGTGACAACTGTTTCTTCATG 471 489 549 Antisense
AATCTTCTATGTCTTCTTTATCGTT 34 171 588 Antisense
TTTATCGTTGCCGGAATCGCCGTGG 149 655 604 Antisense
TTAATGAGTCTCTCGTTGGCGGCAG 157 683 736 Antisense
GCGGCAGGTGTTCATGTCGTTTGCA 152 293 754 Antisense
CCCTGCTAGGCGTTTTATCGGCAAT 297 255 788 Antisense
TGAGTAATTTTCGCTATTTCCCATT 309 565 830 Antisense
CATTCATCCTCACACTAATCATACA 611 215 851 Antisense
AGAACATGGTGCTGCATCTACCGTC 355 73 876 Antisense
TGCATCTACCGTCATCATGTTCATG 431 579 888 Antisense
Sequence Source Affymetrix Proprietary Database