[Home] | [Total List]

[190911_at] ADP. ATP carrier protein

Description F25B4.7 /REP_DB=WormBase Gene ID /WP=CE09625 /TR=P91270 /GB=AAB37086.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=ADP. ATP carrier protein
Cluster 6grp_highest_10_10 > 67      6grp_high1_10_10 > 75      4grp_highest_8_8 > 38      4grp_high_8_8 > 03      6grp_highest_nonorm > 87      6grp_total > 75      4grp_total > 05      6grp_highest_sub > In      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1232
1 2 3 4 range
A 1031.4
(3)
P 		714.5
(-3)
P 		737.6
(-2.6)
P 		919.5
(0.9)
P 		317
B 1170
(-0.6)
P 		796.2
(-2.9)
P 		773.8
(-3)
P 		1750.3
(3)
P 		977
C 1084.3
(-1.1)
P 		686.1
(-3)
P 		838.2
(-2.3)
P 		1917.9
(3)
P 		1232
avr 1095.2
(-0.3) 		732.3
(-3) 		783.2
(-2.6) 		1529.2
(3) 		797

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 807
1 2 3 4 5 6 range
A 841
(-3)
P 		1016.6
(-1.4)
P 		1153.8
(-0.2)
P 		1266.3
(0.8)
P 		1002
(-1.6)
P 		1515.6
(3)
P 		675
B 954.1
(-3)
P 		1264.5
(1.3)
P 		1003.5
(-2.3)
P 		1158.9
(-0.2)
P 		1223.7
(0.7)
P 		1391
(3)
P 		437
C 876.1
(-3)
P 		1226.9
(-0.3)
P 		1062.6
(-1.6)
P 		1270.5
(0.1)
P 		889
(-2.9)
P 		1647.9
(3)
P 		772
avr 890.4
(-3) 		1169.3
(-0.3) 		1073.3
(-1.3) 		1231.9
(0.3) 		1038.2
(-1.6) 		1518.2
(3) 		628
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 241
1 2 3 4 range
A 375.5
(3)
P 		155.1
(-2.5)
P 		192.8
(-1.6)
P 		134.6
(-3)
P 		241
B 373.1
(3)
P 		196.6
(-2.5)
P 		179.3
(-3)
P 		373
(3)
P 		194
C 358.9
(3)
P 		197.3
(-3)
P 		292.1
(0.5)
P 		323.4
(1.7)
P 		162
avr 369.2
(3) 		183
(-3) 		221.4
(-1.8) 		277
(0) 		186

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 397
1 2 3 4 5 6 range
A 155
(-3)
P 		361.5
(2.8)
P 		251.3
(-0.3)
P 		321.2
(1.7)
P 		302.3
(1.1)
P 		369
(3)
P 		214
B 332
(-1.1)
P 		420.9
(0.9)
P 		243.7
(-3)
P 		307
(-1.6)
P 		497.2
(2.5)
P 		518.7
(3)
P 		275
C 324.7
(-1.6)
P 		374.3
(-0.6)
P 		270.4
(-2.7)
P 		255.5
(-3)
P 		287.7
(-2.3)
P 		551.7
(3)
P 		296
avr 270.6
(-2.6) 		385.6
(0.5) 		255.1
(-3) 		294.6
(-1.9) 		362.4
(-0.1) 		479.8
(3) 		225
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190911_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11749
Sequence Type Exemplar sequence
Representative Public ID F25B4.7 NCBI
Target Description F25B4.7 /REP_DB=WormBase Gene ID /WP=CE09625 /TR=P91270 /GB=AAB37086.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=ADP. ATP carrier protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072097(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072097 NCBI Caenorhabditis elegans F25B4.7 (F25B4.7) mRNA, complete cds. 11/11 None
SNAP00000033034 ENSEMBL cdna:SNAP chromosome:CEL140:V:5688474:5689765:-1 11/11 None
GENEFINDER00000033045 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5688474:5689765:-1 11/11 None
F25B4.7 ENSEMBL cdna:known chromosome:CEL140:V:5688474:5689976:-1 gene:F25B4.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5688473-5690016(-) 100.0 100.0
Public Domain and Genome References
Gene Title ADP. ATP carrier protein
Ensembl F25B4.7
Entrez Gene 184917 Entrez gene
SwissProt P91270 EMBL-EBI
WormBase CE35287 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6810 transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5743 mitochondrial inner membrane inferred from electronic annotation QuickGO AmiGO
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5215 transporter activity inferred from electronic annotation QuickGO AmiGO
5488 binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB37086 Hypothetical protein F25B4.7 [Caenorhabditis elegans] ref|NP_504498.2| F25B4.7 [Caenorhabditis elegans] 1.0E-174
blast CAE64587 Hypothetical protein CBG09342 [Caenorhabditis briggsae] 1.0E-166
blast BAD86710.1 adenine nucleotide translocator s254 [Takifugu rubripes] 2.0E-81
Protein Domains
Database ID Description E-Value
Pfam IPR001993 EMBL-EBI Mitochondrial substrate carrier 7.9E-29
Pfam IPR001993 EMBL-EBI Mitochondrial substrate carrier 2.4E-25
Pfam IPR001993 EMBL-EBI Mitochondrial substrate carrier 6.3E-20
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504498.2 3 122-144,219-241,277-299
F25B4.7 3 122-144,219-241,277-299
SNAP00000033034 3 122-144,219-241,277-299
GENEFINDER00000033045 3 122-144,219-241,277-299
Sequence
Target Sequence 
>C. ELEGANS:190911_AT
ggatcaggatgtgctactcttgccaccatctatcctcttgattttataagaacgaggttg
gccatcgatttgggaaagagaaaatcggatcgcgaattcacgggaatgttcgattgtgct
aagaaaataattaaaagtgacggagttccaggcttatacaaaggtctgattccatcgctt
caatacatgattatctatcgaggagcatattatggtctgttcgatacaacggctccatat
atgaatagtgacggaaagatgacatttactgaagcatttcttgttggacaagtcgtcact
ctgatcgctgcaatgacatcttatccactggatactgtaagaagacgactgatgatgggt
gctggaaagaagacgttaccgttcaataacacaatatcctgcatcaaatacatttacacg
aaggaaggacccaaggcatttttccatggagccctggtgaacgcgattcgtggaactggt
gcagcattggttctggcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATCAGGATGTGCTACTCTTGCCA 631 511 466 Antisense
CCACCATCTATCCTCTTGATTTTAT 62 275 488 Antisense
GAACGAGGTTGGCCATCGATTTGGG 541 345 515 Antisense
ATCGGATCGCGAATTCACGGGAATG 267 35 549 Antisense
TACAAAGGTCTGATTCCATCGCTTC 417 641 622 Antisense
ATGGTCTGTTCGATACAACGGCTCC 490 49 677 Antisense
TTGGACAAGTCGTCACTCTGATCGC 439 709 749 Antisense
GATCGCTGCAATGACATCTTATCCA 489 417 768 Antisense
GAAGGACCCAAGGCATTTTTCCATG 61 333 889 Antisense
TTTTCCATGGAGCCCTGGTGAACGC 87 671 905 Antisense
AACTGGTGCAGCATTGGTTCTGGCG 445 143 939 Antisense
Sequence Source Affymetrix Proprietary Database