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[190909_at] ADP, ATP carrier protein

Description W02D3.6 /REP_DB=WormBase Gene ID /WP=CE14428 /TR=O01813 /GB=AAK21485.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=ADP, ATP carrier protein
Cluster 6grp_total > 79      4grp_total > 56      6grp_cgc > 59      6grp_cgc_sub > Da      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 12
(-3)
A 		20.5
(0.3)
A 		27.3
(3)
A 		25.6
(2.3)
A 		15
B 24.2
(1.7)
A 		24.2
(1.7)
A 		28.5
(3)
A 		8.4
(-3)
A 		20
C 15.1
(1.9)
A 		12.6
(-0.7)
A 		10.4
(-3)
A 		16.1
(3)
A 		6
avr 17.1
(-2.6) 		19.1
(-0.3) 		22.1
(3) 		16.7
(-3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 63
1 2 3 4 5 6 range
A 12.7
(-3)
A 		31.6
(0.1)
A 		49.2
(3)
M 		29.9
(-0.2)
A 		25.1
(-1)
A 		47
(2.6)
A 		37
B 28.2
(-0.5)
A 		27.8
(-0.5)
A 		4.8
(-3)
A 		34.9
(0.2)
A 		45.4
(1.4)
P 		60.7
(3)
P 		56
C 24.4
(-1)
A 		18.7
(-1.5)
A 		3.5
(-3)
A 		3.4
(-3)
A 		41.8
(0.7)
P 		65.9
(3)
P 		63
avr 21.8
(-2.6) 		26
(-1.9) 		19.2
(-3) 		22.7
(-2.5) 		37.4
(-0.2) 		57.9
(3) 		39
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 4.4
(-1.8)
A 		4.5
(-1.6)
A 		7.1
(3)
A 		3.7
(-3)
A 		3
B 7.7
(3)
A 		6
(1.3)
A 		6.6
(1.9)
A 		1.8
(-3)
A 		6
C 5
(3)
A 		3.6
(-0.7)
A 		3.6
(-0.7)
A 		2.7
(-3)
A 		2
avr 5.7
(2.8) 		4.7
(0.9) 		5.8
(3) 		2.7
(-3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 2.3
(-3)
A 		11.2
(2.9)
A 		10.7
(2.5)
M 		7.6
(0.5)
A 		7.6
(0.5)
A 		11.4
(3)
A 		9
B 9.8
(-0.6)
A 		9.3
(-0.7)
A 		1.2
(-3)
A 		9.3
(-0.7)
A 		18.5
(1.9)
P 		22.6
(3)
P 		21
C 9
(-0.7)
A 		5.7
(-1.6)
A 		0.9
(-2.9)
A 		0.7
(-3)
A 		13.5
(0.6)
P 		22.1
(3)
P 		21
avr 7
(-1.9) 		8.7
(-1.2) 		4.3
(-3) 		5.9
(-2.3) 		13.2
(0.7) 		18.7
(3) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190909_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1280
Sequence Type Exemplar sequence
Representative Public ID W02D3.6 NCBI
Target Description W02D3.6 /REP_DB=WormBase Gene ID /WP=CE14428 /TR=O01813 /GB=AAK21485.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=ADP, ATP carrier protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059526(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059526 NCBI Caenorhabditis elegans W02D3.6 (W02D3.6) mRNA, complete cds. 11/11 None
SNAP00000042717 ENSEMBL cdna:SNAP chromosome:CEL140:I:6738191:6739093:-1 11/11 None
GENEFINDER00000042727 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:6738191:6739093:-1 11/11 None
W02D3.6 ENSEMBL cdna:known chromosome:CEL140:I:6738191:6739093:-1 gene:W02D3.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6738119-6739022(-) 100.0 100.0
Public Domain and Genome References
Gene Title ADP, ATP carrier protein
Ensembl W02D3.6
Entrez Gene 189112 Entrez gene
SwissProt O01813 EMBL-EBI
WormBase CE14428 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1604403_S_AT similar to solute carrier family 25, member 4 cfa
CANINE_2:CFA.740.2.S1_AT similar to solute carrier family 25, member 4 cfa
CANINE_2:CFAAFFX.12244.1.S1_S_AT similar to solute carrier family 25, member 4 cfa
DROSOPHILA_2:1630941_S_AT stress-sensitive B dm
DROSGENOME1:142494_AT stress-sensitive B dm
CHICKEN:GGA.5566.1.S1_AT solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 4 gga
CHICKEN:GGA.5566.2.S1_AT solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 4 gga
CHICKEN:GGAAFFX.11491.1.S1_S_AT solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 4 gga
HG-U133A:202825_AT solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 4 hs
HG-U133_PLUS_2:202825_AT solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 4 hs
HG-U133A_2:202825_AT solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 4 hs
HG-FOCUS:202825_AT solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 4 hs
HUGENEFL:J04982_AT solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 4 hs
U133_X3P:G4502096_3P_AT solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 4 hs
HG-U95AV2:32822_AT solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 4 hs
U133_X3P:HS2.246506.1.S1_3P_AT Solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6 hs
HG-U133_PLUS_2:1557631_AT Solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6 hs
MU11KSUBA:U27315_F_AT solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 4 mm
MU11KSUBB:MSA.18000.0_F_AT solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 4 mm
MU11KSUBB:MSA.32581.0_F_AT solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 4 mm
MU11KSUBB:MSA.12516.0_F_AT solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 4 mm
MU11KSUBB:MSA.21932.0_S_AT solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 4 mm
MU11KSUBB:MSA.2642.0_F_AT solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 4 mm
MG-U74AV2:93084_AT solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 4 mm
MG-U74BV2:164425_F_AT solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 4 mm
MOE430A:1424562_A_AT solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 4 mm
MOUSE430A_2:1424562_A_AT solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 4 mm
MOUSE430_2:1424562_A_AT solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 4 mm
MOE430A:1424563_AT solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 4 mm
MOUSE430A_2:1424563_AT solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 4 mm
MOUSE430_2:1424563_AT solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 4 mm
MOE430A:1434897_A_AT solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 4 mm
MOUSE430A_2:1434897_A_AT solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 4 mm
MOUSE430_2:1434897_A_AT solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 4 mm
MOE430A:1455069_X_AT solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 4 mm
MOUSE430A_2:1455069_X_AT solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 4 mm
MOUSE430_2:1455069_X_AT solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 4 mm
MU11KSUBB:MSA.29655.0_S_AT Solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 4, mRNA (cDNA clone MGC:25083 IMAGE:4500784) mm
MU19KSUBB:TC33217_F_AT Solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 4, mRNA (cDNA clone MGC:25083 IMAGE:4500784) mm
MU19KSUBB:TC33218_AT Solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 4, mRNA (cDNA clone MGC:25083 IMAGE:4500784) mm
MU19KSUBB:TC33219_AT Solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 4, mRNA (cDNA clone MGC:25083 IMAGE:4500784) mm
MU19KSUBB:TC33220_AT Solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 4, mRNA (cDNA clone MGC:25083 IMAGE:4500784) mm
RG-U34A:D12770_S_AT solute carrier family 25 (mitochondrial adenine nucleotide translocator) member 4 rn
RAE230A:1388112_AT solute carrier family 25 (mitochondrial adenine nucleotide translocator) member 4 rn
RAT230_2:1388112_AT solute carrier family 25 (mitochondrial adenine nucleotide translocator) member 4 rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6810 transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5743 mitochondrial inner membrane inferred from electronic annotation QuickGO AmiGO
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5215 transporter activity inferred from electronic annotation QuickGO AmiGO
5488 binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK21485 Hypothetical protein W02D3.6 [Caenorhabditis elegans] ref|NP_491927.1| W02D3.6 [Caenorhabditis elegans] 1.0E-164
blast CAE60169 Hypothetical protein CBG03723 [Caenorhabditis briggsae] 1.0E-137
blast CAE73690 Hypothetical protein CBG21201 [Caenorhabditis briggsae] 1.0E-135
Protein Domains
Database ID Description E-Value
Pfam IPR001993 EMBL-EBI Mitochondrial substrate carrier 6.1E-36
Pfam IPR001993 EMBL-EBI Mitochondrial substrate carrier 2.5E-31
Pfam IPR001993 EMBL-EBI Mitochondrial substrate carrier 6.0E-22
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_491927.1 2 176-198,213-235
W02D3.6 2 176-198,213-235
SNAP00000042717 2 176-198,213-235
GENEFINDER00000042727 2 176-198,213-235
Sequence
Target Sequence 
>C. ELEGANS:190909_AT
ttctttgctggaaatctcgcttctggtggagcagctggtgcaacatctctatgcttcgtg
tacccactggattttgtgcgtactcgtcttggagccgatgttggaaaaggagtggataga
gagtttcaaggtctaacggattgttttgtgaaaattgtgaaatcagatggaccaattggt
ctttatagaggattttttgtttcagtacaaggaattataatttatcgtgcagcatatttc
ggaatgtttgatactgccaaaacattgtactcaactgacgggcaaaaactcaatttcttt
acgacatgggcaattgctcaagttggaacagttggttctggatatttatcatatccatgg
gatacagtacgtcgtcgaatgatgatgcaatcagggagaaaggatattctctataaaaac
actttggattgtgttagaaagattgtgaagaatgaaggaattactgcattatacaaagga
ggtctttcaaatgtattccgagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCTTTGCTGGAAATCTCGCTTCTG 223 691 358 Antisense
GGTGGAGCAGCTGGTGCAACATCTC 423 499 382 Antisense
TGCAACATCTCTATGCTTCGTGTAC 433 577 396 Antisense
TCGTGTACCCACTGGATTTTGTGCG 174 605 413 Antisense
TTTTGTGCGTACTCGTCTTGGAGCC 389 671 429 Antisense
AACATTGTACTCAACTGACGGGCAA 204 137 618 Antisense
AACTCAATTTCTTTACGACATGGGC 167 141 644 Antisense
CGACATGGGCAATTGCTCAAGTTGG 624 251 659 Antisense
TATCCATGGGATACAGTACGTCGTC 41 659 709 Antisense
GTACGTCGTCGAATGATGATGCAAT 279 459 724 Antisense
GAGGTCTTTCAAATGTATTCCGAGC 661 401 836 Antisense
Sequence Source Affymetrix Proprietary Database