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[190908_s_at] ras-related like protein

Description F08G12.1 /REP_DB=WormBase Gene ID /WP=CE03166 /TR=Q19210 /GB=CAA91454.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=ras-related like protein
Cluster 6grp_highest_10_10 > 01      6grp_high1_10_10 > 08      4grp_highest_8_8 > 45      4grp_high_8_8 > 09      6grp_highest_nonorm > 80      6grp_total > 09      4grp_total > 23      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 157
1 2 3 4 range
A 200.7
(0.1)
P 		119.6
(-3)
P 		135.4
(-2.4)
P 		276.8
(3)
P 		157
B 185.9
(0.3)
P 		176.7
(-1.4)
P 		199.8
(3)
P 		168.4
(-3)
P 		31
C 254.8
(3)
P 		222.4
(0.7)
P 		193.3
(-1.4)
P 		171.4
(-3)
P 		83
avr 213.8
(3) 		172.9
(-3) 		176.2
(-2.5) 		205.5
(1.8) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 137
1 2 3 4 5 6 range
A 204.9
(0.3)
P 		177.7
(-3)
P 		227.7
(3)
P 		221.5
(2.3)
P 		183.6
(-2.3)
P 		194.7
(-1)
P 		50
B 237.1
(2.8)
P 		159.5
(-2.9)
P 		224.9
(1.9)
P 		240.1
(3)
P 		210.7
(0.8)
P 		158.2
(-3)
P 		82
C 295.1
(3)
P 		202.1
(-1.8)
P 		179
(-3)
P 		214.5
(-1.2)
P 		219
(-0.9)
P 		227.4
(-0.5)
P 		116
avr 245.7
(3) 		179.8
(-3) 		210.5
(-0.2) 		225.4
(1.2) 		204.4
(-0.8) 		193.4
(-1.8) 		66
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 58
1 2 3 4 range
A 73.1
(3)
P 		26
(-3)
P 		35.4
(-1.8)
P 		40.5
(-1.2)
P 		47
B 59.3
(3)
P 		43.6
(-1)
P 		46.3
(-0.3)
P 		35.9
(-3)
P 		23
C 84.3
(3)
P 		63.9
(0.8)
P 		67.4
(1.2)
P 		28.9
(-3)
P 		55
avr 72.2
(3) 		44.5
(-1.5) 		49.7
(-0.6) 		35.1
(-3) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 72
1 2 3 4 5 6 range
A 37.8
(-3)
P 		63.2
(3)
P 		49.6
(-0.2)
P 		56.2
(1.3)
P 		55.4
(1.2)
P 		47.4
(-0.7)
P 		25
B 82.5
(2.4)
P 		53.1
(-3)
P 		54.6
(-2.7)
P 		63.6
(-1.1)
P 		85.6
(3)
P 		59
(-1.9)
P 		33
C 109.4
(3)
P 		61.7
(-1.3)
P 		45.6
(-2.8)
P 		43.1
(-3)
P 		70.9
(-0.5)
P 		76.1
(-0)
P 		66
avr 76.6
(3) 		59.3
(-0.9) 		49.9
(-3) 		54.3
(-2) 		70.6
(1.7) 		60.8
(-0.6) 		27
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 190908_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17025
Sequence Type Exemplar sequence
Representative Public ID F08G12.1 NCBI
Target Description F08G12.1 /REP_DB=WormBase Gene ID /WP=CE03166 /TR=Q19210 /GB=CAA91454.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=ras-related like protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077487(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077487 NCBI Caenorhabditis elegans F08G12.1 (F08G12.1) mRNA, complete cds. 11/11 None
SNAP00000008602 ENSEMBL cdna:SNAP chromosome:CEL140:X:11302218:11303462:-1 11/11 None
GENEFINDER00000008619 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:11302218:11305797:-1 11/11 None
F08G12.1 ENSEMBL cdna:known chromosome:CEL140:X:11301998:11305797:-1 gene:F08G12.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11302217-11305797(-) 100.0 100.0
Public Domain and Genome References
Gene Title ras-related like protein
Ensembl F08G12.1
Entrez Gene 181320 Entrez gene
SwissProt Q19210 EMBL-EBI
WormBase CE03166 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFA.19848.1.S1_S_AT similar to F08G12.1 cfa
CANINE_2:CFA.21535.1.S1_S_AT similar to F08G12.1 cfa
CANINE_2:CFA.4451.1.S1_AT similar to F08G12.1 cfa
CANINE_2:CFAAFFX.29904.1.S1_S_AT similar to F08G12.1 cfa
CANINE_2:CFAAFFX.29909.1.S1_AT similar to F08G12.1 cfa
CHICKEN:GGAAFFX.22755.1.S1_S_AT similar to Hypothetical protein MGC76314 gga
HG-U133B:225377_AT chromosome 9 open reading frame 86 hs
HG-U133_PLUS_2:225377_AT chromosome 9 open reading frame 86 hs
HG-U133_PLUS_2:223166_X_AT chromosome 9 open reading frame 86 hs
HG-U133B:223166_X_AT chromosome 9 open reading frame 86 hs
HG-U133_PLUS_2:219828_AT chromosome 9 open reading frame 86 hs
HG-U133A:219828_AT chromosome 9 open reading frame 86 hs
HG-U133A_2:219828_AT chromosome 9 open reading frame 86 hs
HU35KSUBB:RC_AA211483_AT chromosome 9 open reading frame 86 hs
HU35KSUBD:RC_AA599674_AT chromosome 9 open reading frame 86 hs
U133_X3P:G13435142_3P_AT chromosome 9 open reading frame 86 hs
U133_X3P:G12804174_3P_X_AT chromosome 9 open reading frame 86 hs
U133_X3P:G12804174_3P_A_AT chromosome 9 open reading frame 86 hs
U133_X3P:HS.108115.3.A1_3P_AT chromosome 9 open reading frame 86 hs
HG-U95B:48084_AT chromosome 9 open reading frame 86 hs
HG-U95C:58465_S_AT chromosome 9 open reading frame 86 hs
HG-U95C:58470_R_AT chromosome 9 open reading frame 86 hs
HG-U95E:85574_AT chromosome 9 open reading frame 86 hs
MOE430A:1435067_AT RIKEN cDNA B230208H17 gene mm
MOUSE430A_2:1435067_AT RIKEN cDNA B230208H17 gene mm
MOUSE430_2:1435067_AT RIKEN cDNA B230208H17 gene mm
MOUSE430A_2:1456701_AT RIKEN cDNA B230208H17 gene mm
MOE430A:1456701_AT RIKEN cDNA B230208H17 gene mm
MOUSE430_2:1456701_AT RIKEN cDNA B230208H17 gene mm
MG-U74BV2:112916_AT RIKEN cDNA B230208H17 gene mm
MG-U74BV2:114663_AT RIKEN cDNA B230208H17 gene mm
MOE430A:1452370_S_AT RIKEN cDNA B230208H17 gene mm
MOUSE430A_2:1452370_S_AT RIKEN cDNA B230208H17 gene mm
MOUSE430_2:1452370_S_AT RIKEN cDNA B230208H17 gene mm
MOE430B:1438100_AT RIKEN cDNA B230208H17 gene mm
MOUSE430_2:1438100_AT RIKEN cDNA B230208H17 gene mm
MOE430B:1440943_AT RIKEN cDNA B230208H17 gene mm
MOUSE430_2:1440943_AT RIKEN cDNA B230208H17 gene mm
MG-U74CV2:134201_AT RIKEN cDNA B230208H17 gene mm
MU19KSUBA:TC19979_AT RIKEN cDNA B230208H17 gene, mRNA (cDNA clone MGC:102197 IMAGE:5716088) mm
MU19KSUBB:TC30534_AT RIKEN cDNA B230208H17 gene, mRNA (cDNA clone MGC:102197 IMAGE:5716088) mm
RG-U34B:RC_AI011359_AT similar to hypothetical protein FLJ13045 (predicted) rn
RAE230A:1372618_AT similar to hypothetical protein FLJ13045 (predicted) rn
RAT230_2:1372618_AT similar to hypothetical protein FLJ13045 (predicted) rn
RAE230B:1380667_AT similar to hypothetical protein FLJ13045 (predicted) rn
RAT230_2:1380667_AT similar to hypothetical protein FLJ13045 (predicted) rn
RAE230B:1377683_AT similar to hypothetical protein FLJ13045 (predicted) rn
RAT230_2:1377683_AT similar to hypothetical protein FLJ13045 (predicted) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7264 small GTPase mediated signal transduction inferred from electronic annotation QuickGO AmiGO
15031 protein transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5525 GTP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA91454 Hypothetical protein F08G12.1 [Caenorhabditis elegans] ref|NP_509888.1| F08G12.1 [Caenorhabditis elegans] 0.0
blast CAE70665 Hypothetical protein CBG17372 [Caenorhabditis briggsae] 0.0
blast CAA91454 Hypothetical protein F08G12.1 [Caenorhabditis elegans] ref|NP_509888.1| F08G12.1 [Caenorhabditis elegans] 1.0E-92
blast XP_537794 PREDICTED: similar to F08G12.1 [Canis familiaris] 1.0E-72
Sequence
Target Sequence 
>C. ELEGANS:190908_S_AT
tgtcaactccaatcgcgtatcatgttaaagtccatgacgatgacgtcgattcgcccgtta
ttgaacaaccgccaattgcatcagagagctttgaaagtccaaaattcgaagcaccaccac
cacttcctacgaacaaccccttaacagttgccatgacgtcagacgatttggatgcttggc
ttggttctgatgaccagtcaccaaagtcaactaatacggtgcctgagcaacacaacagca
gcgacgaagaattcggagtggaacttccggaacctataacaaagccaacattggacattt
tcgcacctatttccgacgataaaccatcatcggagtctagaacaccggtgaatttggatg
attctttggaagaaatcgataaaatcgaaaaaatcacgaaaaagaaaaagaccaaaaaaa
gtacgaaaaaggtgaaggcagaggaggaagctgagcaggaagaaaaattgacaaagaaat
ccaagaaaactccaaaaaagaaggctgccgaaaaaacatcccaatctcttctcgaagact
ttttaggtcctgccgatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTCAACTCCAATCGCGTATCATGT 340 557 1328 Antisense
ATGACGATGACGTCGATTCGCCCGT 668 43 1361 Antisense
GATTCGCCCGTTATTGAACAACCGC 437 419 1375 Antisense
GAACAACCGCCAATTGCATCAGAGA 327 353 1390 Antisense
ACCCCTTAACAGTTGCCATGACGTC 484 87 1463 Antisense
GACGTCAGACGATTTGGATGCTTGG 335 377 1482 Antisense
TGGATGCTTGGCTTGGTTCTGATGA 236 549 1496 Antisense
TACGGTGCCTGAGCAACACAACAGC 359 647 1542 Antisense
ATTTTCGCACCTATTTCCGACGATA 61 15 1624 Antisense
GAAAAAACATCCCAATCTCTTCTCG 109 355 1837 Antisense
GAAGACTTTTTAGGTCCTGCCGATG 432 339 1861 Antisense
Sequence Source Affymetrix Proprietary Database