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[190907_at] serine protease inhibitor

Description ZK287.4 /REP_DB=WormBase Gene ID /WP=CE06613 /TR=Q23456 /GB=CAA94800.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=serine protease inhibitor
Cluster 6grp_total > 10      4grp_total > 49      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 198
1 2 3 4 range
A 4.5
(-3)
A 		166.6
(2.8)
A 		173.1
(3)
A 		7.4
(-2.9)
A 		169
B 4.5
(-3)
A 		200.6
(3)
A 		157.3
(1.7)
A 		3
(-3)
A 		198
C 3.7
(-3)
A 		184.1
(2.9)
A 		187.6
(3)
A 		3.7
(-3)
A 		184
avr 4.2
(-3) 		183.8
(3) 		172.7
(2.6) 		4.7
(-3) 		180

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 162
1 2 3 4 5 6 range
A 57.6
(-2.3)
A 		140.3
(3)
A 		54.6
(-2.5)
A 		91.7
(-0.1)
A 		67.8
(-1.6)
A 		46.1
(-3)
A 		94
B 29.1
(-3)
A 		136.8
(3)
A 		80
(-0.2)
A 		61.5
(-1.2)
A 		94.9
(0.7)
A 		40.5
(-2.4)
A 		108
C 4
(-3)
A 		165.9
(3)
A 		98.9
(0.5)
A 		59
(-1)
A 		58.8
(-1)
A 		43.4
(-1.5)
A 		162
avr 30.2
(-3) 		147.7
(3) 		77.8
(-0.6) 		70.7
(-0.9) 		73.8
(-0.8) 		43.3
(-2.3) 		118
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 65
1 2 3 4 range
A 1.6
(-2.9)
A 		36.2
(1.8)
A 		45.2
(3)
A 		1.1
(-3)
A 		44
B 1.4
(-2.9)
A 		49.6
(3)
A 		36.5
(1.4)
A 		0.6
(-3)
A 		49
C 1.2
(-2.9)
A 		52.9
(1.8)
A 		65.4
(3)
A 		0.6
(-3)
A 		65
avr 1.4
(-2.9) 		46.2
(2.7) 		49
(3) 		0.8
(-3) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 10.6
(-3)
A 		49.9
(3)
A 		11.9
(-2.8)
A 		23.2
(-1.1)
A 		20.5
(-1.5)
A 		11.2
(-2.9)
A 		39
B 10.1
(-3)
A 		45.6
(3)
A 		19.4
(-1.4)
A 		16.3
(-2)
A 		38.5
(1.8)
A 		15.1
(-2.2)
A 		36
C 1.5
(-3)
A 		50.6
(3)
A 		25.2
(-0.1)
A 		11.9
(-1.7)
A 		19
(-0.9)
A 		14.5
(-1.4)
A 		49
avr 7.4
(-3) 		48.7
(3) 		18.8
(-1.3) 		17.1
(-1.6) 		26
(-0.3) 		13.6
(-2.1) 		41
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190907_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11714
Sequence Type Exemplar sequence
Representative Public ID ZK287.4 NCBI
Target Description ZK287.4 /REP_DB=WormBase Gene ID /WP=CE06613 /TR=Q23456 /GB=CAA94800.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=serine protease inhibitor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073094(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073094 NCBI Caenorhabditis elegans ZK287.4 (ZK287.4) mRNA, complete cds. 11/11 None
SNAP00000034523 ENSEMBL cdna:SNAP chromosome:CEL140:V:9682958:9688242:-1 11/11 None
GENEFINDER00000034533 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:9682958:9691007:-1 11/11 None
ZK287.4 ENSEMBL cdna:known chromosome:CEL140:V:9682958:9688029:-1 gene:ZK287.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9682957-9688029(-) 100.0 100.0
Public Domain and Genome References
Gene Title serine protease inhibitor
Ensembl ZK287.4
Entrez Gene 191282 Entrez gene
SwissProt Q23456 EMBL-EBI
WormBase CE06613 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
4867 serine-type endopeptidase inhibitor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA94800 Hypothetical protein ZK287.4 [Caenorhabditis elegans] ref|NP_505495.1| ZK287.4 [Caenorhabditis elegans] 0.0
blast CAE72228 Hypothetical protein CBG19340 [Caenorhabditis briggsae] 0.0
blast CAA21511 Hypothetical protein Y43F8B.3 [Caenorhabditis elegans] ref|NP_507794.1| Y43F8B.3 [Caenorhabditis elegans] 2.0E-26
Protein Domains
Database ID Description E-Value
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 4.0E-26
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 3.1E-26
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 1.3E-25
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 3.3E-24
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 1.8E-22
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 1.3E-24
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 4.0E-26
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 3.1E-26
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 1.3E-25
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 3.3E-24
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 1.8E-22
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 1.3E-24
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 4.0E-26
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 3.1E-26
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 1.3E-25
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 3.3E-24
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 1.8E-22
Pfam IPR002223 EMBL-EBI Pancreatic trypsin inhibitor (Kunitz) 1.3E-24
Sequence
Target Sequence 
>C. ELEGANS:190907_AT
tttagttctctggccaacagtccaatgtcggctgttcctcctccaccaccaactctgatg
ccatcaccaccggtaacttcttctccattcacattcgtgccgaggaacatgtgtccacaa
ggagatccattgattactgttgatggcacgcctattcaatgtgatccgtcgaaagcagca
aagtgtcccggtgatcatgtgtgtactccgagaggaaacgaagcatattgttgtccatca
ccaatgaacttctgcctacaatcccgtccaccaatctcagtttgctctggtccagacttc
gaacctgtccgtgaaattcgttttacttacgatccattggcagatcgatgtgttcgattt
agcttccaaaattgtcgtggagctgctttctcacccactggaagtctgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTAGTTCTCTGGCCAACAGTCCAA 372 669 3112 Antisense
AACAGTCCAATGTCGGCTGTTCCTC 116 137 3127 Antisense
TCTCCATTCACATTCGTGCCGAGGA 83 611 3193 Antisense
TGATTACTGTTGATGGCACGCCTAT 40 565 3242 Antisense
GCACGCCTATTCAATGTGATCCGTC 271 313 3257 Antisense
AGTGTCCCGGTGATCATGTGTGTAC 575 59 3293 Antisense
CCATCACCAATGAACTTCTGCCTAC 342 271 3346 Antisense
TCTCAGTTTGCTCTGGTCCAGACTT 114 613 3386 Antisense
GACTTCGAACCTGTCCGTGAAATTC 685 367 3406 Antisense
AATTGTCGTGGAGCTGCTTTCTCAC 254 179 3481 Antisense
CTTTCTCACCCACTGGAAGTCTGAA 116 223 3497 Antisense
Sequence Source Affymetrix Proprietary Database