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[190904_s_at] protein phosphatase PP2A

Description C06G1.5 /REP_DB=WormBase Gene ID /WP=CE19684 /TR=Q17744 /GB=AAK32946.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=protein phosphatase PP2A
Cluster 6grp_highest_10_10 > 21      6grp_high1_10_10 > 14      4grp_high_8_8 > 43      6grp_highest_nonorm > 80      6grp_total > 14      4grp_total > 53      6grp_highest_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 378
1 2 3 4 range
A 340.9
(2.9)
P 		343.4
(3)
P 		245.6
(0.8)
P 		82.3
(-3)
A 		261
B 460.1
(3)
P 		312.4
(0.6)
P 		223.5
(-0.8)
P 		88.7
(-3)
P 		371
C 346.4
(2.3)
P 		375.3
(3)
P 		296.4
(1.1)
P 		124
(-3)
P 		251
avr 382.5
(3) 		343.7
(2.2) 		255.2
(0.3) 		98.3
(-3) 		284

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 306
1 2 3 4 5 6 range
A 318.1
(1.7)
P 		366.2
(3)
P 		150.2
(-2.8)
P 		222.8
(-0.8)
P 		165.3
(-2.4)
P 		141.7
(-3)
P 		225
B 341
(3)
P 		323.4
(2.6)
P 		252.7
(0.8)
P 		209.8
(-0.3)
P 		162.2
(-1.4)
P 		99.6
(-3)
P 		241
C 406
(3)
P 		278.3
(0.5)
P 		292
(0.7)
P 		258.6
(0.1)
P 		194.3
(-1.2)
P 		102.8
(-3)
P 		303
avr 355
(3) 		322.6
(2.2) 		231.6
(-0.1) 		230.4
(-0.1) 		173.9
(-1.5) 		114.7
(-3) 		240
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 135
1 2 3 4 range
A 124.1
(3)
P 		74.6
(0.4)
P 		64.2
(-0.2)
P 		12
(-3)
A 		112
B 146.7
(3)
P 		77.2
(-0.3)
P 		51.8
(-1.5)
P 		18.9
(-3)
P 		128
C 114.7
(3)
P 		107.9
(2.6)
P 		103.3
(2.3)
P 		20.9
(-3)
P 		94
avr 128.5
(3) 		86.6
(0.7) 		73.1
(0) 		17.3
(-3) 		111

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 118
1 2 3 4 5 6 range
A 58.6
(-1.4)
P 		130.2
(3)
P 		32.7
(-3)
P 		56.5
(-1.5)
P 		49.9
(-1.9)
P 		34.5
(-2.9)
P 		98
B 118.6
(3)
P 		107.6
(2.2)
P 		61.4
(-1.2)
P 		55.6
(-1.6)
P 		65.9
(-0.9)
P 		37.2
(-3)
P 		81
C 150.5
(3)
P 		84.9
(-0.4)
P 		74.3
(-0.9)
P 		52
(-2.1)
P 		62.9
(-1.5)
P 		34.4
(-3)
P 		116
avr 109.2
(3) 		107.6
(2.9) 		56.1
(-1.3) 		54.7
(-1.4) 		59.6
(-1) 		35.4
(-3) 		74
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 190904_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17391
Sequence Type Exemplar sequence
Representative Public ID C06G1.5 NCBI
Target Description C06G1.5 /REP_DB=WormBase Gene ID /WP=CE19684 /TR=Q17744 /GB=AAK32946.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=protein phosphatase PP2A
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078289(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078289 NCBI Caenorhabditis elegans C06G1.5 (C06G1.5) mRNA, complete cds. 11/11 None
C06G1.5 ENSEMBL cdna:known chromosome:CEL140:X:16638158:16642974:-1 gene:C06G1.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:16638634-16654396(-) 100.0 100.0
Public Domain and Genome References
Gene Title protein phosphatase PP2A
Ensembl C06G1.5
Entrez Gene 181721 Entrez gene
SwissProt Q17744 EMBL-EBI
WormBase CE37187 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:246050_S_AT calcium-binding EF hand family protein at
CANINE_2:CFA.21268.1.S1_AT similar to protein phosphatase 2, regulatory subunit B isoform 1 cfa
CANINE_2:CFAAFFX.17129.1.S1_AT similar to protein phosphatase 2, regulatory subunit B isoform 1 cfa
DROSOPHILA_2:1633088_AT dm
DROSGENOME1:150227_AT dm
CHICKEN:GGAAFFX.10687.1.S1_AT similar to protein phosphatase 2A 48 kDa regulatory subunit isoform 1; serine/threonine protein phosphatase 2A, 48kDa regulatory subunit; PP2A, subunit B, PR48 isoform; PP2A B subunit PR48; NY-REN-8 antigen gga
HG-U133_PLUS_2:219264_S_AT protein phosphatase 2 (formerly 2A), regulatory subunit B'', beta hs
HG-U133A:219264_S_AT protein phosphatase 2 (formerly 2A), regulatory subunit B'', beta hs
HG-FOCUS:219264_S_AT protein phosphatase 2 (formerly 2A), regulatory subunit B'', beta hs
HG-U133A_2:219264_S_AT protein phosphatase 2 (formerly 2A), regulatory subunit B'', beta hs
HU35KSUBC:RC_AA404555_AT protein phosphatase 2 (formerly 2A), regulatory subunit B'', beta hs
U133_X3P:G7019500_3P_X_AT protein phosphatase 2 (formerly 2A), regulatory subunit B'', beta hs
U133_X3P:G7019500_3P_A_AT protein phosphatase 2 (formerly 2A), regulatory subunit B'', beta hs
U133_X3P:HS2.407106.1.A1_3P_AT protein phosphatase 2 (formerly 2A), regulatory subunit B'', beta hs
U133_X3P:219264_3P_S_AT protein phosphatase 2 (formerly 2A), regulatory subunit B'', beta hs
HG-U133_PLUS_2:1566630_AT protein phosphatase 2 (formerly 2A), regulatory subunit B'', beta hs
HG-U95C:51166_F_AT protein phosphatase 2 (formerly 2A), regulatory subunit B'', beta hs
HG-U95D:71651_AT protein phosphatase 2 (formerly 2A), regulatory subunit B'', beta hs
HG-U95D:89606_I_AT protein phosphatase 2 (formerly 2A), regulatory subunit B'', beta hs
HG-U95D:89607_R_AT protein phosphatase 2 (formerly 2A), regulatory subunit B'', beta hs
HG-U95E:90020_AT protein phosphatase 2 (formerly 2A), regulatory subunit B'', beta hs
HG-U95D:89425_R_AT Protein phosphatase 2 (formerly 2A), regulatory subunit B'', beta hs
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5509 calcium ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK32946 Hypothetical protein C06G1.5 [Caenorhabditis elegans] ref|NP_510690.3| C06G1.5 [Caenorhabditis elegans] 0.0
blast CAE69953 Hypothetical protein CBG16342 [Caenorhabditis briggsae] 0.0
blast EAA07362 ENSANGP00000014986 [Anopheles gambiae str. PEST] ref|XP_311649.2| ENSANGP00000014986 [Anopheles gambiae str. PEST] 2.0E-95
Sequence
Target Sequence 
>C. ELEGANS:190904_S_AT
ggctcaacacgctggtggagctctcgtacctatggttgtagatagaatattttcgggagc
agtttgtaccaatccaaatcgtgggcaaccagtagaagatattgggctggcagagtttac
acaatttttgctcgccgaagaagataagacacatccaacgagtatcgaatactggttccg
aatcttggatttagacggcgacggtcttgtgacactttatgacatggaactattccatac
tcaagtacagagaaagttagccgccgaaggaatcgattcgatgggattcgcagatgttgc
ttgccagctcatcgatatgctcaatgtgcccggaggtgtatccgcatttaggctcagcga
cttgaaaaagtcttcattgcgaggaaggtttatcaacaccttcgtgaactggaggaagtt
cttcgcccaaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCTCAACACGCTGGTGGAGCTCTC 436 537 3417 Antisense
TGGAGCTCTCGTACCTATGGTTGTA 115 549 3432 Antisense
TTTTCGGGAGCAGTTTGTACCAATC 488 657 3466 Antisense
AGTTTACACAATTTTTGCTCGCCGA 139 63 3530 Antisense
AGACGGCGACGGTCTTGTGACACTT 550 71 3609 Antisense
GGATTCGCAGATGTTGCTTGCCAGC 230 509 3700 Antisense
GCTTGCCAGCTCATCGATATGCTCA 371 307 3715 Antisense
GCTCAATGTGCCCGGAGGTGTATCC 69 303 3735 Antisense
AGGTGTATCCGCATTTAGGCTCAGC 626 57 3750 Antisense
GGTTTATCAACACCTTCGTGAACTG 458 505 3803 Antisense
ACTGGAGGAAGTTCTTCGCCCAAGA 215 97 3824 Antisense
Sequence Source Affymetrix Proprietary Database