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[190902_at] serine/threonine kinase

Description R10D12.10 /REP_DB=WormBase Gene ID /WP=CE12690 /TR=Q9XVK4 /GB=CAB03241.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=serine-threonine kinase
Cluster 6grp_total > 57      4grp_total > 36      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 6.1
(3)
A 		3.5
(-3)
A 		4
(-1.8)
A 		4.7
(-0.2)
A 		3
B 4.3
(-1.4)
A 		7.9
(3)
A 		3
(-3)
A 		3.2
(-2.8)
A 		5
C 3.1
(-1.3)
A 		2.9
(-1.6)
A 		2
(-3)
A 		5.8
(3)
A 		4
avr 4.5
(2) 		4.8
(3) 		3
(-3) 		4.6
(2.3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 4.1
(-2.9)
A 		23.1
(1.7)
A 		3.6
(-3)
A 		20.7
(1.1)
A 		9.1
(-1.7)
A 		28.7
(3)
A 		25
B 31.3
(3)
A 		5.5
(-3)
A 		25.5
(1.7)
A 		5.5
(-3)
A 		8.8
(-2.2)
A 		29
(2.5)
A 		26
C 9.5
(-1.8)
A 		5.8
(-2.7)
A 		4.7
(-3)
A 		7.8
(-2.2)
A 		6.2
(-2.6)
A 		27.8
(3)
A 		23
avr 15
(-1) 		11.5
(-2) 		11.3
(-2) 		11.3
(-2) 		8
(-3) 		28.5
(3) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 2.2
(3)
A 		0.8
(-2.6)
A 		1
(-1.8)
A 		0.7
(-3)
A 		2
B 1.4
(0.2)
A 		2
(3)
A 		0.7
(-3)
A 		0.7
(-3)
A 		1
C 1
(3)
A 		0.8
(-1)
A 		0.7
(-3)
A 		1
(3)
A 		0
avr 1.5
(3) 		1.2
(0.4) 		0.8
(-3) 		0.8
(-3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 0.8
(-3)
A 		8.2
(3)
A 		0.8
(-3)
A 		5.3
(0.6)
A 		2.7
(-1.5)
A 		7
(2)
A 		7
B 10.9
(3)
A 		1.8
(-2.8)
A 		6.2
(-0)
A 		1.5
(-3)
A 		3.6
(-1.7)
A 		10.8
(2.9)
A 		9
C 3.5
(-1.3)
A 		1.8
(-2.6)
A 		1.2
(-3)
A 		1.6
(-2.7)
A 		2
(-2.4)
A 		9.3
(3)
A 		8
avr 5.1
(-0.7) 		3.9
(-1.9) 		2.7
(-3) 		2.8
(-2.9) 		2.8
(-2.9) 		9
(3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190902_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13379
Sequence Type Exemplar sequence
Representative Public ID R10D12.10 NCBI
Target Description R10D12.10 /REP_DB=WormBase Gene ID /WP=CE12690 /TR=Q9XVK4 /GB=CAB03241.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=serine-threonine kinase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074064(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074064 NCBI Caenorhabditis elegans R10D12.10 (R10D12.10) mRNA, complete cds. 11/11 None
SNAP00000021055 ENSEMBL cdna:SNAP chromosome:CEL140:V:13958786:13960912:-1 11/11 None
GENEFINDER00000021071 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:13958786:13960912:-1 11/11 None
R10D12.10 ENSEMBL cdna:known chromosome:CEL140:V:13959118:13960912:-1 gene:R10D12.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13959117-13960912(-) 87.17 100.0
Public Domain and Genome References
Gene Title serine/threonine kinase
Ensembl R10D12.10
Entrez Gene 187766 Entrez gene
SwissProt Q9XVK4 EMBL-EBI
WormBase CE12690 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6468 protein amino acid phosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4672 protein kinase activity inferred from electronic annotation QuickGO AmiGO
4674 protein serine/threonine kinase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03241 Hypothetical protein R10D12.10 [Caenorhabditis elegans] ref|NP_506465.1| R10D12.10 [Caenorhabditis elegans] 0.0
blast CAE66182 Hypothetical protein CBG11420 [Caenorhabditis briggsae] 1.0E-117
blast NP_491433 W09C3.1 [Caenorhabditis elegans] 2.0E-67
Sequence
Target Sequence 
>C. ELEGANS:190902_AT
gtttgtcgagctgcgagcattcttgccatggactgactcaacatctcgtttcaagtacgg
acctctgaaaagagaacttctcgatgatttgcttgcctcggacccattcatcacaacctt
ctgcccgatcgtgacacttttgagagaaggcaagtacgcggatcgcccagactacggaaa
aatctacgaaatcttggctgcaaaaatgacatcaatgggcgtgaaatggacggatccaat
ggattttgatttgcaagcagacaagcctaactacttctcgaaatcaccatcaaatgaaga
agtgatgacagatgagcagatttccgccgcgtttcacgaacaaattgtgccgggtggtct
acagtacgtcttgccagcaaatgtgccgtttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTTGTCGAGCTGCGAGCATTCTTG 703 451 678 Antisense
AGCATTCTTGCCATGGACTGACTCA 161 75 693 Antisense
GACTGACTCAACATCTCGTTTCAAG 79 373 708 Antisense
TCTCGATGATTTGCTTGCCTCGGAC 460 611 756 Antisense
TCTGCCCGATCGTGACACTTTTGAG 185 609 797 Antisense
AGAAGGCAAGTACGCGGATCGCCCA 370 75 822 Antisense
GCAGACAAGCCTAACTACTTCTCGA 10 311 934 Antisense
TGACAGATGAGCAGATTTCCGCCGC 687 571 983 Antisense
GAACAAATTGTGCCGGGTGGTCTAC 695 351 1015 Antisense
GTGGTCTACAGTACGTCTTGCCAGC 229 489 1031 Antisense
GTCTTGCCAGCAAATGTGCCGTTTT 12 469 1045 Antisense
Sequence Source Affymetrix Proprietary Database