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[190901_s_at]

Description K04H4.2A /REP_DB=WormBase Gene ID /WP=CE19967 /TR=SW:P34504 /GB=CAA81587.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Chitin-binding motifs
Cluster 6grp_highest_10_10 > 08      6grp_high1_10_10 > 33      4grp_highest_8_8 > 02      4grp_high_8_8 > 46      6grp_highest_nonorm > 52      6grp_total > 02      4grp_total > 49      6grp_high1_sub > 02      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1414
1 2 3 4 range
A 78.1
(-3)
P 		1432.4
(3)
P 		1214.2
(2)
P 		89.8
(-2.9)
P 		1354
B 52.2
(-3)
P 		1281.3
(3)
P 		1117
(2.2)
P 		75.6
(-2.9)
P 		1229
C 75.8
(-3)
P 		1466.4
(3)
P 		1154
(1.7)
P 		119.6
(-2.8)
P 		1391
avr 68.7
(-3) 		1393.4
(3) 		1161.7
(2) 		95
(-2.9) 		1325

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 875
1 2 3 4 5 6 range
A 463.7
(-3)
P 		1158.1
(3)
P 		545
(-2.3)
P 		781.1
(-0.3)
P 		760.7
(-0.4)
P 		533.1
(-2.4)
P 		694
B 493.6
(-1.6)
P 		1092.5
(3)
P 		532.5
(-1.3)
P 		794.9
(0.7)
P 		687.8
(-0.1)
P 		314.1
(-3)
P 		778
C 569.9
(-0.9)
P 		1097
(3)
P 		631.3
(-0.4)
P 		726.2
(0.3)
P 		843.5
(1.1)
P 		282.7
(-3)
P 		814
avr 509.1
(-1.9) 		1115.9
(3) 		569.6
(-1.4) 		767.4
(0.2) 		764
(0.1) 		376.6
(-3) 		739
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 409
1 2 3 4 range
A 28.4
(-2.7)
P 		310.9
(2.9)
P 		317.4
(3)
P 		13.1
(-3)
P 		304
B 16.7
(-3)
P 		316.5
(3)
P 		258.8
(1.8)
P 		16.1
(-3)
P 		300
C 25.1
(-2.9)
P 		421.6
(3)
P 		402.2
(2.7)
P 		20.2
(-3)
P 		401
avr 23.4
(-2.9) 		349.7
(3) 		326.1
(2.6) 		16.5
(-3) 		333

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 326
1 2 3 4 5 6 range
A 85.5
(-3)
P 		411.9
(3)
P 		118.7
(-2.4)
P 		198.1
(-0.9)
P 		229.6
(-0.4)
P 		129.8
(-2.2)
P 		326
B 171.8
(-1.7)
P 		363.7
(3)
P 		129.3
(-2.7)
P 		210.5
(-0.7)
P 		279.4
(0.9)
P 		117.1
(-3)
P 		247
C 211.2
(-0.1)
P 		334.7
(3)
P 		160.7
(-1.3)
P 		146
(-1.7)
P 		272.9
(1.5)
P 		94.6
(-3)
P 		240
avr 156.2
(-2) 		370.1
(3) 		136.2
(-2.5) 		184.9
(-1.3) 		260.6
(0.4) 		113.8
(-3) 		256
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 190901_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7459
Sequence Type Exemplar sequence
Representative Public ID K04H4.2A NCBI
Target Description K04H4.2A /REP_DB=WormBase Gene ID /WP=CE19967 /TR=SW:P34504 /GB=CAA81587.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Chitin-binding motifs
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027493(10), NM_066657(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027493 NCBI Caenorhabditis elegans K04H4.2c (K04H4.2) mRNA, complete cds. 10/11 None
NM_066657 NCBI Caenorhabditis elegans K04H4.2b (K04H4.2) mRNA, complete cds. 10/11 None
SNAP00000032558 ENSEMBL cdna:SNAP chromosome:CEL140:III:9348018:9353243:-1 10/11 None
GENEFINDER00000032569 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:9348083:9351316:-1 10/11 None
K04H4.2c.1 ENSEMBL cdna:known chromosome:CEL140:III:9347649:9355241:-1 gene:K04H4.2 10/11 A 
K04H4.2c.2 ENSEMBL cdna:known chromosome:CEL140:III:9347670:9355241:-1 gene:K04H4.2 10/11 A 
K04H4.2b ENSEMBL cdna:known chromosome:CEL140:III:9348083:9355241:-1 gene:K04H4.2 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_066658 5/11 Cross Hyb Matching Probes None
K04H4.2a.2 5/11 Cross Hyb Matching Probes A 
K04H4.2a.1 5/11 Cross Hyb Matching Probes A 
K04H4.2a.3 5/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
176315 3 2 NM_001027493 174044_at (11), 190901_s_at (10)
NM_066657 190901_s_at (10)
NM_066658 174044_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9348078-9355237(-) 100.0 100.0
Public Domain and Genome References
Ensembl K04H4.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAH04706 Hypothetical protein K04H4.2c [Caenorhabditis elegans] ref|NP_001022664.1| K04H4.2c [Caenorhabditis elegans] sp|P34504|YMV2_CAEEL Hypothetical protein K04H4.2 precursor 0.0
blast CAA81588 Hypothetical protein K04H4.2b [Caenorhabditis elegans] ref|NP_499058.3| K04H4.2b [Caenorhabditis elegans] 0.0
blast B88553 protein K04H4.2b [imported] - Caenorhabditis elegans 0.0
blast CAE65229 Hypothetical protein CBG10108 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR007026 EMBL-EBI CC domain 0.89
Pfam IPR007026 EMBL-EBI CC domain 15.0
Pfam IPR007026 EMBL-EBI CC domain 20.0
Pfam IPR007026 EMBL-EBI CC domain 0.064
Pfam IPR007026 EMBL-EBI CC domain 0.081
Pfam IPR007026 EMBL-EBI CC domain 1.3E-5
Pfam IPR007026 EMBL-EBI CC domain 0.17
Pfam IPR007026 EMBL-EBI CC domain 0.0025
Pfam IPR007026 EMBL-EBI CC domain 29.0
Pfam IPR007026 EMBL-EBI CC domain 20.0
Pfam IPR007026 EMBL-EBI CC domain 0.064
Pfam IPR007026 EMBL-EBI CC domain 0.081
Pfam IPR007026 EMBL-EBI CC domain 1.3E-5
Pfam IPR007026 EMBL-EBI CC domain 0.17
Pfam IPR007026 EMBL-EBI CC domain 0.0025
Pfam IPR007026 EMBL-EBI CC domain 29.0
Pfam IPR007026 EMBL-EBI CC domain 0.89
Pfam IPR007026 EMBL-EBI CC domain 20.0
Pfam IPR007026 EMBL-EBI CC domain 0.064
Pfam IPR007026 EMBL-EBI CC domain 0.081
Pfam IPR007026 EMBL-EBI CC domain 1.3E-5
Pfam IPR007026 EMBL-EBI CC domain 0.17
Pfam IPR007026 EMBL-EBI CC domain 0.0025
Pfam IPR007026 EMBL-EBI CC domain 29.0
Pfam IPR007026 EMBL-EBI CC domain 20.0
Pfam IPR007026 EMBL-EBI CC domain 0.064
Pfam IPR007026 EMBL-EBI CC domain 0.081
Pfam IPR007026 EMBL-EBI CC domain 1.3E-5
Pfam IPR007026 EMBL-EBI CC domain 0.17
Pfam IPR007026 EMBL-EBI CC domain 0.0025
Pfam IPR007026 EMBL-EBI CC domain 29.0
Sequence
Target Sequence 
>C. ELEGANS:190901_S_AT
tgtatcgatcttcagtgtaccaccggactttgcctcactgctaatcaaatcggagactgc
gacacagcaacagacgccggaacctgcccaactggatacacttgcttcacgaacgccgga
atctgttgttctaccactactttcagccgtcttcgtattggtaactctcgacaaatggct
caaaagccaaactatggacgtccacttcacagttatatgcctcgcaaatgtccatccggt
gacaccgccgtctccggatgcttcccaaatggatcatgtggaactggatatgaatgtgtt
tcttcattaaatctctgctgtccaccaggtcaaccacagacattcccatcattcccgggt
aacaacaatggtttcaacatcaacaacaacaatcgattcggatcattgtcgatgtcgccg
cgacccatcggcgcccgttgtcagcttgacggcgagtgcgtcggacaagccgaggggctt
tcaatgtgccacgctggagtttgccagtgctctccgatcgcctacacgcaaggaatcgca
tgcgttagacgaaagtctttccaaatgaacgacgacccagtgatcgacgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTATCGATCTTCAGTGTACCACCG 73 559 3124 Antisense
TGGATACACTTGCTTCACGAACGCC 277 551 3216 Antisense
GAATCTGTTGTTCTACCACTACTTT 395 327 3242 Antisense
AGCCGTCTTCGTATTGGTAACTCTC 628 83 3268 Antisense
CCACTTCACAGTTATATGCCTCGCA 111 275 3325 Antisense
TCTTCATTAAATCTCTGCTGTCCAC 294 617 3424 Antisense
CATTCCCATCATTCCCGGGTAACAA 402 217 3464 Antisense
TCGGATCATTGTCGATGTCGCCGCG 123 607 3521 Antisense
CGAGGGGCTTTCAATGTGCCACGCT 657 247 3594 Antisense
GCCACGCTGGAGTTTGCCAGTGCTC 22 281 3611 Antisense
TGAACGACGACCCAGTGATCGACGC 667 571 3689 Antisense
Sequence Source Affymetrix Proprietary Database