[Home] | [Total List]

[190900_s_at]

Description C09B8.6 /REP_DB=WormBase Gene ID /WP=CE02466 /TR=Q17849 /GB=AAA68804.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=Small heat shock protein
Cluster 6grp_highest_10_10 > 04      6grp_high1_10_10 > 32      4grp_highest_8_8 > 24      4grp_high_8_8 > 51      6grp_highest_nonorm > 37      6grp_total > 31      4grp_total > 60      6grp_cgc > 61      6grp_high1_sub > 02_03      6grp_cgc_sub > De      6grp_total_sub > Hat      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5204
1 2 3 4 range
A 5747.5
(2.3)
P 		6369.7
(3)
P 		5584.9
(2.1)
P 		1291.7
(-3)
P 		5078
B 6219.2
(3)
P 		5728.3
(2.4)
P 		5977.5
(2.7)
P 		1319.3
(-3)
P 		4900
C 5911.9
(3)
P 		5008.1
(1.9)
P 		5506.3
(2.5)
P 		1165.3
(-3)
P 		4747
avr 5959.5
(3) 		5702
(2.7) 		5689.6
(2.7) 		1258.8
(-3) 		4701

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3082
1 2 3 4 5 6 range
A 4541.2
(0.8)
P 		5157.6
(2.7)
P 		5247.8
(3)
P 		4359.7
(0.2)
P 		4840.7
(1.7)
P 		3356
(-3)
P 		1892
B 4649.5
(0)
P 		5279.8
(1.3)
P 		6176.4
(3)
P 		5039.8
(0.8)
P 		4576.4
(-0.1)
P 		3094.8
(-3)
P 		3082
C 4652.3
(0.4)
P 		5097.2
(2)
P 		5382.5
(3)
P 		4532.6
(-0)
P 		4744.1
(0.7)
P 		3703.2
(-3)
P 		1679
avr 4614.3
(0.3) 		5178.2
(1.9) 		5602.2
(3) 		4644
(0.4) 		4720.4
(0.6) 		3384.7
(-3) 		2218
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1904
1 2 3 4 range
A 2092.7
(3)
P 		1382.7
(0.8)
P 		1460
(1)
P 		189.1
(-3)
P 		1904
B 1983.2
(3)
P 		1414.8
(1)
P 		1385.1
(0.9)
P 		281.1
(-3)
P 		1702
C 1957
(3)
P 		1439.8
(1.2)
P 		1919.1
(2.9)
P 		196.5
(-3)
P 		1761
avr 2011
(3) 		1412.4
(1) 		1588.1
(1.6) 		222.2
(-3) 		1789

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1042
1 2 3 4 5 6 range
A 837.1
(-2.9)
P 		1834.3
(3)
P 		1142.9
(-1.1)
P 		1105.7
(-1.3)
P 		1460.7
(0.8)
P 		817.1
(-3)
P 		1017
B 1617.8
(0.9)
P 		1757.4
(2.1)
P 		1499.8
(-0.1)
P 		1334.9
(-1.5)
P 		1859.3
(3)
P 		1154
(-3)
P 		705
C 1724.4
(3)
P 		1555.3
(1.8)
P 		1369.9
(0.4)
P 		911.5
(-3)
P 		1535.1
(1.6)
P 		1239.7
(-0.6)
P 		813
avr 1393.1
(0) 		1715.7
(3) 		1337.5
(-0.5) 		1117.4
(-2.6) 		1618.4
(2.1) 		1070.3
(-3) 		645
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 190900_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17133
Sequence Type Exemplar sequence
Representative Public ID C09B8.6 NCBI
Target Description C09B8.6 /REP_DB=WormBase Gene ID /WP=CE02466 /TR=Q17849 /GB=AAA68804.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=Small heat shock protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029205(11), NM_001029203(11), NM_001029204(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029205 NCBI Caenorhabditis elegans Heat Shock Protein family member (hsp-25) (hsp-25) mRNA, complete cds. 11/11 None
NM_001029203 NCBI Caenorhabditis elegans Heat Shock Protein family member (hsp-25) (hsp-25) mRNA, complete cds. 11/11 None
NM_001029204 NCBI Caenorhabditis elegans Heat Shock Protein family member (hsp-25) (hsp-25) mRNA, complete cds. 11/11 None
GENEFINDER00000035915 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:6034705:6039190:-1 11/11 None
C09B8.6c.3 ENSEMBL cdna:known chromosome:CEL140:X:6034433:6039420:-1 gene:C09B8.6 11/11 None
C09B8.6c.1 ENSEMBL cdna:known chromosome:CEL140:X:6034433:6039194:-1 gene:C09B8.6 11/11 None
C09B8.6c.4 ENSEMBL cdna:known chromosome:CEL140:X:6034433:6037654:-1 gene:C09B8.6 9/11 None
C09B8.6c.2 ENSEMBL cdna:known chromosome:CEL140:X:6034433:6039201:-1 gene:C09B8.6 11/11 None
C09B8.6b ENSEMBL cdna:known chromosome:CEL140:X:6034705:6039190:-1 gene:C09B8.6 11/11 None
C09B8.6a ENSEMBL cdna:known chromosome:CEL140:X:6034705:6039421:-1 gene:C09B8.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000035905 6/11 Cross Hyb Matching Probes None
SNAP00000035906 3/11 Cross Hyb Matching Probes None
SNAP00000035907 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:6034704-6039421(-) 100.0 100.0
Public Domain and Genome References
Ensembl C09B8.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA68804 Heat shock protein protein 25, isoform a [Caenorhabditis elegans] ref|NP_001024374.1| Heat Shock Protein family member (hsp-25) [Caenorhabditis elegans] 1.0E-112
blast AAO61437 Heat shock protein protein 25, isoform b [Caenorhabditis elegans] ref|NP_001024375.1| Heat Shock Protein family member (hsp-25) [Caenorhabditis elegans] 1.0E-103
blast AAA68804 Heat shock protein protein 25, isoform a [Caenorhabditis elegans] ref|NP_001024374.1| Heat Shock Protein family member (hsp-25) [Caenorhabditis elegans] 1.0E-103
Protein Domains
Database ID Description E-Value
Pfam IPR002068 EMBL-EBI Heat shock protein Hsp20 3.1E-17
Pfam IPR002068 EMBL-EBI Heat shock protein Hsp20 3.1E-17
Pfam IPR002068 EMBL-EBI Heat shock protein Hsp20 3.1E-17
Sequence
Target Sequence 
>C. ELEGANS:190900_S_AT
cgttccaactactcggtcattgacaatgaatttggaaatatgcgtgatcgttttgagcaa
gagatgcgtcgtgttgaggaggagatgaaacgtcttcgcagtgaatttgaaggctatcgt
ccaaacggaggcccaccggctgccatctccaatcagccgtacaacgcctactcgaacact
tcttctcaccacgagacttcgaaccgtactggtggattcggatctccacttccaccacca
tctttccacggacccagcgacttgatggctcatcgtccaacctacgatccatacttggac
aacttgaagagcccactcatcaaggatgaaagtgatggaaagactcttcgtctcagattt
gacgtagctaactacaagccagaggaggttaccgtcaagactattgacaaccgtcttctt
gtccacgccaaacacgaggagaagaccccacaacgcaccgttttcagagagtacaaccag
gaattccttcttccaagaggcaccaacccagaacaaatctcatcgactctttcgactgat
ggcgtgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGTTCCAACTACTCGGTCATTGACA 9 241 82 Antisense
GAAGGCTATCGTCCAAACGGAGGCC 270 333 190 Antisense
CGGCTGCCATCTCCAATCAGCCGTA 242 61 218 Antisense
CTCACCACGAGACTTCGAACCGTAC 649 227 266 Antisense
TGGTGGATTCGGATCTCCACTTCCA 469 553 291 Antisense
TCATCGTCCAACCTACGATCCATAC 35 621 351 Antisense
GGACAACTTGAAGAGCCCACTCATC 238 527 378 Antisense
TTCTTGTCCACGCCAAACACGAGGA 672 689 497 Antisense
CAACGCACCGTTTTCAGAGAGTACA 475 187 532 Antisense
GAATTCCTTCTTCCAAGAGGCACCA 217 323 562 Antisense
TCGACTCTTTCGACTGATGGCGTGC 656 601 604 Antisense
Sequence Source Affymetrix Proprietary Database