[Home] | [Total List]

[190897_at] protein tyrosine kinase

Description Y38H6C.20 /REP_DB=WormBase Gene ID /WP=CE19114 /TR=Q9XX42 /GB=CAA20997.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=protein tyrosine kinase
Cluster 6grp_total > 06      4grp_total > 46      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 337
1 2 3 4 range
A 426.3
(3)
P 		150.7
(-2.1)
A 		106.9
(-3)
A 		104.6
(-3)
A 		322
B 325
(3)
P 		157.1
(-1.4)
P 		95.7
(-3)
A 		114.8
(-2.5)
M 		229
C 352.4
(3)
P 		188.2
(-0.8)
M 		89.8
(-3)
A 		89.8
(-3)
P 		263
avr 367.9
(3) 		165.3
(-1.5) 		97.5
(-3) 		103.1
(-2.9) 		270

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 257
1 2 3 4 5 6 range
A 310.9
(3)
P 		195.2
(0.3)
P 		96.8
(-2)
P 		112.7
(-1.6)
P 		92.6
(-2.1)
A 		54.1
(-3)
A 		257
B 226.8
(3)
P 		152.5
(0.2)
P 		88.5
(-2.3)
P 		70
(-3)
A 		92.4
(-2.1)
M 		98.5
(-1.9)
P 		157
C 231.9
(3)
P 		187.9
(1.3)
P 		144
(-0.5)
M 		114.1
(-1.7)
A 		81
(-3)
A 		80.1
(-3)
M 		152
avr 256.5
(3) 		178.5
(0.4) 		109.8
(-1.9) 		98.9
(-2.3) 		88.7
(-2.6) 		77.6
(-3) 		179
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 140
1 2 3 4 range
A 155.2
(3)
P 		32.7
(-2.3)
A 		28
(-2.5)
A 		15.3
(-3)
A 		140
B 103.6
(3)
P 		38.8
(-1.8)
P 		22.2
(-3)
A 		24.5
(-2.8)
M 		81
C 116.7
(3)
P 		54.1
(-0.7)
M 		31.3
(-2)
A 		15.1
(-3)
P 		102
avr 125.2
(3) 		41.9
(-1.7) 		27.2
(-2.5) 		18.3
(-3) 		107

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 73
1 2 3 4 5 6 range
A 57.3
(1.7)
P 		69.4
(3)
P 		21.1
(-2.2)
P 		28.6
(-1.4)
P 		27.9
(-1.4)
A 		13.2
(-3)
A 		56
B 78.9
(3)
P 		50.8
(0.2)
P 		21.5
(-2.7)
P 		18.5
(-3)
A 		37.5
(-1.1)
M 		36.7
(-1.2)
P 		60
C 85.9
(3)
P 		57.3
(0.3)
P 		36.7
(-1.7)
M 		22.9
(-3)
A 		26.2
(-2.7)
A 		26.8
(-2.6)
M 		63
avr 74
(3) 		59.2
(1.2) 		26.4
(-2.6) 		23.3
(-3) 		30.5
(-2.1) 		25.6
(-2.7) 		51
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190897_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14315
Sequence Type Exemplar sequence
Representative Public ID Y38H6C.20 NCBI
Target Description Y38H6C.20 /REP_DB=WormBase Gene ID /WP=CE19114 /TR=Q9XX42 /GB=CAA20997.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=protein tyrosine kinase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075561(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075561 NCBI Caenorhabditis elegans Y38H6C.20 (Y38H6C.20) mRNA, complete cds. 11/11 None
SNAP00000041331 ENSEMBL cdna:SNAP chromosome:CEL140:V:20545344:20549098:-1 11/11 None
GENEFINDER00000041354 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:20545344:20549098:-1 11/11 None
Y38H6C.20 ENSEMBL cdna:known chromosome:CEL140:V:20545344:20549098:-1 gene:Y38H6C.20 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:20545343-20549098(-) 100.0 100.0
Public Domain and Genome References
Gene Title protein tyrosine kinase
Ensembl Y38H6C.20
Entrez Gene 189700 Entrez gene
SwissProt Q9XX42 EMBL-EBI
WormBase CE38642 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA20997 Hypothetical protein Y38H6C.20 [Caenorhabditis elegans] ref|NP_507962.2| Y38H6C.20 [Caenorhabditis elegans] 0.0
blast T26707 hypothetical protein Y38H6C.20 - Caenorhabditis elegans 0.0
blast CAE61666 Hypothetical protein CBG05605 [Caenorhabditis briggsae] 0.0
blast CAA20997 Hypothetical protein Y38H6C.20 [Caenorhabditis elegans] ref|NP_507962.2| Y38H6C.20 [Caenorhabditis elegans] 1.0E-156
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 2.2E-40
Pfam IPR000719 EMBL-EBI Protein kinase 2.2E-40
Pfam IPR000719 EMBL-EBI Protein kinase 2.0E-28
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507962.2 1 341-360
Y38H6C.20 1 297-319
SNAP00000041331 1 241-260
GENEFINDER00000041354 1 297-319
Sequence
Target Sequence 
>C. ELEGANS:190897_AT
gccagacacgtcatgatttcttcggatcataatgtgaaattggcggatttcggaagcatt
tccacacctaccacgcctaattgcacacccgtggaaaatcaatacaaatggtgtgcgctg
gagttgctacgtggcgagactgccacatgcctctcagacgtctggtcctttggtgtggtt
ttgtgggagatatttacgatgggtggatgtccgtattataatgtgcccgatgttggaata
cgtggattagtggagaaagggtttaggttgcaaaaacccgatggatgtaatattcaaatc
taccaattgatgcgggaaacatggctggacagccccacagaccgcccgactttcagccaa
atttctcaaagaatctcacaatctgcaacccagttctcaccggacgcctcacggaacttt
ttaacgatctccacactttgtgactactacctcgatga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCAGACACGTCATGATTTCTTCGG 195 281 1534 Antisense
TTTCGGAAGCATTTCCACACCTACC 353 669 1581 Antisense
CGCCTAATTGCACACCCGTGGAAAA 201 245 1607 Antisense
AATGGTGTGCGCTGGAGTTGCTACG 294 163 1640 Antisense
ACGTGGCGAGACTGCCACATGCCTC 36 95 1662 Antisense
TCTGGTCCTTTGGTGTGGTTTTGTG 223 607 1694 Antisense
GGATGTCCGTATTATAATGTGCCCG 559 511 1738 Antisense
CCGACTTTCAGCCAAATTTCTCAAA 447 263 1879 Antisense
GAATCTCACAATCTGCAACCCAGTT 337 327 1904 Antisense
GAACTTTTTAACGATCTCCACACTT 663 349 1947 Antisense
CACTTTGTGACTACTACCTCGATGA 507 197 1967 Antisense
Sequence Source Affymetrix Proprietary Database