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[190896_at] Transthyretin-like family

Description C04G2.1 /REP_DB=WormBase Gene ID /WP=CE05211 /TR=Q17629 /GB=CAA94673.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Transthyretin-like family
Cluster 6grp_highest_10_10 > 38      6grp_high1_10_10 > 73      4grp_highest_8_8 > 39      4grp_high_8_8 > 04      6grp_highest_nonorm > 63      6grp_total > 70      4grp_total > 05      6grp_highest_sub > 04      6grp_high1_sub > 03_04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 788
1 2 3 4 range
A 566.4
(-1.7)
P 		422.1
(-2.9)
P 		410.5
(-3)
P 		1133.6
(3)
P 		723
B 611.5
(0.1)
P 		345.7
(-3)
P 		407.2
(-2.3)
P 		867.8
(3)
P 		522
C 632.3
(-0.5)
P 		440.1
(-2.7)
P 		409.1
(-3)
P 		945.1
(3)
P 		536
avr 603.4
(-0.9) 		402.6
(-3) 		408.9
(-2.9) 		982.2
(3) 		580

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 453
1 2 3 4 5 6 range
A 468.7
(-3)
P 		671.5
(0.2)
P 		770.8
(1.8)
P 		847.7
(3)
P 		506.8
(-2.4)
P 		757.6
(1.6)
P 		379
B 473.6
(-3)
P 		542.5
(-1.2)
P 		507
(-2.1)
P 		707.6
(3)
P 		518.6
(-1.8)
P 		657.1
(1.7)
P 		234
C 627.2
(-1.7)
P 		678.7
(-0.9)
P 		798
(1)
P 		921.5
(3)
P 		561.5
(-2.7)
P 		543.2
(-3)
P 		378
avr 523.2
(-3) 		630.9
(-0.9) 		691.9
(0.3) 		825.6
(3) 		529
(-2.9) 		652.6
(-0.4) 		302
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 124
1 2 3 4 range
A 206.2
(3)
P 		91.6
(-3)
P 		107.3
(-2.2)
P 		165.9
(0.9)
P 		115
B 195
(3)
P 		85.4
(-3)
P 		94.4
(-2.5)
P 		184.9
(2.4)
P 		110
C 209.3
(3)
P 		126.5
(-3)
P 		142.6
(-1.8)
P 		159.4
(-0.6)
P 		83
avr 203.5
(3) 		101.2
(-3) 		114.8
(-2.2) 		170.1
(1) 		102

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 159
1 2 3 4 5 6 range
A 86.4
(-3)
P 		238.8
(3)
P 		167.9
(0.2)
P 		215
(2.1)
P 		152.9
(-0.4)
P 		184.5
(0.9)
P 		152
B 164.8
(-0.9)
P 		180.6
(-0.2)
P 		123.1
(-3)
P 		187.4
(0.2)
P 		210.7
(1.3)
P 		245
(3)
P 		122
C 232.5
(3)
P 		207.1
(0)
P 		203.1
(-0.5)
P 		185.3
(-2.6)
P 		181.7
(-3)
P 		181.8
(-3)
P 		51
avr 161.2
(-3) 		208.8
(3) 		164.7
(-2.6) 		195.9
(1.4) 		181.8
(-0.4) 		203.8
(2.4) 		48
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190896_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10313
Sequence Type Exemplar sequence
Representative Public ID C04G2.1 NCBI
Target Description C04G2.1 /REP_DB=WormBase Gene ID /WP=CE05211 /TR=Q17629 /GB=CAA94673.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Transthyretin-like family
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069430(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069430 NCBI Caenorhabditis elegans C04G2.1 (C04G2.1) mRNA, complete cds. 11/11 None
SNAP00000040130 ENSEMBL cdna:SNAP chromosome:CEL140:IV:10088455:10089816:-1 11/11 None
GENEFINDER00000040150 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:10088455:10089816:-1 11/11 None
C04G2.1 ENSEMBL cdna:known chromosome:CEL140:IV:10088455:10089816:-1 gene:C04G2.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10088460-10089822(-) 100.0 100.0
Public Domain and Genome References
Gene Title Transthyretin-like family
Ensembl C04G2.1
Entrez Gene 182231 Entrez gene
SwissProt Q17629 EMBL-EBI
WormBase CE05211 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94673 Hypothetical protein C04G2.1 [Caenorhabditis elegans] ref|NP_501831.1| C04G2.1 [Caenorhabditis elegans] 2.0E-98
blast CAE59933 Hypothetical protein CBG03419 [Caenorhabditis briggsae] 6.0E-65
blast CAA79556 Hypothetical protein C40H1.5 [Caenorhabditis elegans] ref|NP_499054.1| C40H1.5 [Caenorhabditis elegans] sp|Q03575|YLF5_CAEEL Hypothetical UPF0205 protein C40H1.5 in chromosome III precursor 3.0E-23
Protein Domains
Database ID Description E-Value
Pfam IPR001534 EMBL-EBI Transthyretin-like 3.0E-61
Sequence
Target Sequence 
>C. ELEGANS:190896_AT
ttttgattgttctactattcgccacaatccttttgacattctccaatgcttcaaatctcg
atgaaatcaatgcaaatgcatctgaaacagatgaagtaattgaattaattgcaactcaga
agccgccagttcgttttattgacaaagttcgtgcaattggaagaaaacaggcagtcggcg
taaaagggaaattaatgtgtggaggacgcccagttaggaatgccactgtcaaattgtggg
ataatgatatgttcgatccagacgatcttattgctgaaacccatgtaaacgaagacggaa
ctttcgaagtatctggatttgcaatttcaataactgcaattgatccccaactacgtatat
atcacaattgtcgttcatcttccaaagtttgtcgacgcaagattactttcactgtcccag
acaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTTGATTGTTCTACTATTCGCCAC 107 677 20 Antisense
TCGCCACAATCCTTTTGACATTCTC 79 599 38 Antisense
CATTCTCCAATGCTTCAAATCTCGA 300 217 56 Antisense
TAATTGCAACTCAGAAGCCGCCAGT 202 635 125 Antisense
GCCGCCAGTTCGTTTTATTGACAAA 663 285 141 Antisense
GAGGACGCCCAGTTAGGAATGCCAC 141 405 221 Antisense
GACGATCTTATTGCTGAAACCCATG 109 379 280 Antisense
TAACTGCAATTGATCCCCAACTACG 401 631 350 Antisense
TATCACAATTGTCGTTCATCTTCCA 110 661 379 Antisense
TCATCTTCCAAAGTTTGTCGACGCA 237 619 394 Antisense
GATTACTTTCACTGTCCCAGACAAT 468 429 420 Antisense
Sequence Source Affymetrix Proprietary Database