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[190895_at] UDP-glucuronosyltransferase

Description AC3.8 /REP_DB=WormBase Gene ID /WP=CE05138 /TR=Q17404 /GB=CAA94871.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=UDP-glucuronosyltransferase
Cluster 6grp_highest_10_10 > 11      6grp_high1_10_10 > 01      4grp_high_8_8 > 35      6grp_highest_nonorm > 80      6grp_total > 08      4grp_total > 52      6grp_cgc > 10      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 360
1 2 3 4 range
A 366.5
(2.7)
P 		379.6
(3)
P 		317.8
(1.5)
P 		128
(-3)
A 		252
B 314.4
(2.2)
P 		362.8
(3)
P 		220.7
(0.5)
P 		19.5
(-3)
A 		343
C 351
(3)
P 		338
(1.8)
P 		306.1
(-1)
P 		284.3
(-3)
P 		67
avr 344
(2.6) 		360.1
(3) 		281.5
(0.8) 		143.9
(-3) 		216

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 310
1 2 3 4 5 6 range
A 281.2
(3)
P 		233.1
(1.1)
P 		250.3
(1.7)
P 		234.2
(1.1)
P 		168
(-1.6)
P 		133.2
(-3)
P 		148
B 402.8
(3)
P 		275
(0.5)
P 		224.6
(-0.4)
P 		198.5
(-1)
P 		233.6
(-0.3)
P 		92.7
(-3)
P 		310
C 307.7
(3)
P 		187.2
(-1.4)
P 		228.4
(0.1)
P 		249.6
(0.9)
P 		146.5
(-2.9)
P 		144.4
(-3)
P 		163
avr 330.6
(3) 		231.8
(0.1) 		234.4
(0.2) 		227.4
(0) 		182.7
(-1.3) 		123.4
(-3) 		207
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 129
1 2 3 4 range
A 133.5
(3)
P 		82.4
(0.3)
P 		83.1
(0.4)
P 		18.7
(-3)
A 		115
B 100.3
(3)
P 		89.6
(2.3)
P 		51.1
(-0.1)
P 		4.2
(-3)
A 		96
C 116.2
(3)
P 		97.2
(1.3)
P 		106.7
(2.2)
P 		47.9
(-3)
P 		68
avr 116.7
(3) 		89.7
(1.3) 		80.3
(0.7) 		23.6
(-3) 		93

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 108
1 2 3 4 5 6 range
A 51.8
(-0.7)
P 		82.9
(3)
P 		54.5
(-0.4)
P 		59.4
(0.2)
P 		50.7
(-0.8)
P 		32.4
(-3)
P 		51
B 140.2
(3)
P 		91.5
(0.2)
P 		54.5
(-1.9)
P 		52.6
(-2)
P 		94.9
(0.4)
P 		34.6
(-3)
P 		106
C 114.1
(3)
P 		57.1
(-2.1)
P 		58.1
(-2)
P 		50.2
(-2.7)
P 		47.4
(-3)
P 		48.3
(-2.9)
P 		67
avr 102
(3) 		77.2
(0.7) 		55.7
(-1.4) 		54.1
(-1.5) 		64.3
(-0.6) 		38.4
(-3) 		64
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190895_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11958
Sequence Type Exemplar sequence
Representative Public ID AC3.8 NCBI
Target Description AC3.8 /REP_DB=WormBase Gene ID /WP=CE05138 /TR=Q17404 /GB=CAA94871.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=UDP-glucuronosyltransferase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073271(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073271 NCBI Caenorhabditis elegans AC3.8 (UDP-glucuronosyltransferase) mRNA, complete cds. 11/11 None
SNAP00000028840 ENSEMBL cdna:SNAP chromosome:CEL140:V:10401392:10403593:1 9/11 None
GENEFINDER00000028847 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:10401392:10403804:1 11/11 None
AC3.8 ENSEMBL cdna:known chromosome:CEL140:V:10401392:10403804:1 gene:AC3.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10401391-10403804(+) 100.0 100.0
Public Domain and Genome References
Gene Title UDP-glucuronosyltransferase
Gene Symbol ugt-2
Ensembl AC3.8
Entrez Gene 179450 Entrez gene
SwissProt Q17404 EMBL-EBI
WormBase CE35375 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1638903_AT dm
DROSGENOME1:149798_AT dm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16758 transferase activity, transferring hexosyl groups inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA94871 Hypothetical protein AC3.8 [Caenorhabditis elegans] ref|NP_505672.2| AC3.8 [Caenorhabditis elegans] 0.0
blast CAE64824 Hypothetical protein CBG09620 [Caenorhabditis briggsae] 0.0
blast CAA94870 Hypothetical protein AC3.7 [Caenorhabditis elegans] ref|NP_505671.1| AC3.7 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 5.5E-28
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 5.5E-28
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505672.2 2 7-29,498-520
AC3.8 2 7-29,498-520
SNAP00000028840 1 7-29
GENEFINDER00000028847 2 7-29,498-520
Sequence
Target Sequence 
>C. ELEGANS:190895_AT
attacccgatacaacgttcatctggaagtatgaagtggaagatgcggaattttcaaaaac
actatctgagaatgtgtttctcaaaaaatggattcctcaacctgcacttttagctgatcc
gaggttgaaccttttcattactcacggtggtcttggtagcacattggaagttgcatacgc
tgggaaaccatctttaatgattccaatatttggtgatcaaatgctcaatgcaaaaatgtt
gagccgccacggaggagctatatcctacgataaatacgaattggaaaattatgagaaact
cacagaaacagtgaaggaagcgatttcaaacaaagaatataacaagaaggcattgttatt
ggctgagattcttcataatcaaccaattgatccaaaacaaaacttgttaaagcacgcaga
atttacagcaaaattcggtcgagttcatgctttggagccttacagtgttcatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTACCCGATACAACGTTCATCTGG 97 13 996 Antisense
AAAATGGATTCCTCAACCTGCACTT 379 131 1080 Antisense
TTTAGCTGATCCGAGGTTGAACCTT 452 671 1104 Antisense
GAACCTTTTCATTACTCACGGTGGT 327 345 1122 Antisense
CACGGTGGTCTTGGTAGCACATTGG 426 199 1138 Antisense
GGAAGTTGCATACGCTGGGAAACCA 572 531 1161 Antisense
GCAAAAATGTTGAGCCGCCACGGAG 281 319 1225 Antisense
TGAGCCGCCACGGAGGAGCTATATC 327 567 1235 Antisense
GGCATTGTTATTGGCTGAGATTCTT 509 537 1344 Antisense
TCGGTCGAGTTCATGCTTTGGAGCC 555 605 1430 Antisense
GCTTTGGAGCCTTACAGTGTTCATT 144 305 1444 Antisense
Sequence Source Affymetrix Proprietary Database