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[190894_at] Transducin beta chain

Description K10B2.1 /REP_DB=WormBase Gene ID /WP=CE02008 /TR=SW:Q09990 /GB=AAA68258.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=Transducin beta chain
Cluster 6grp_highest_10_10 > 92      6grp_high1_10_10 > 39      4grp_highest_8_8 > 45      4grp_high_8_8 > 01      6grp_highest_nonorm > 81      6grp_total > 39      4grp_total > 15      6grp_highest_sub > Cu      6grp_cgc > 08      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 128
1 2 3 4 range
A 351.9
(2.4)
P 		294.5
(-2.3)
P 		285.7
(-3)
P 		359.8
(3)
P 		74
B 375.9
(2.5)
P 		258.6
(-3)
P 		334.8
(0.6)
P 		386.6
(3)
P 		128
C 377.8
(3)
P 		328.9
(-2.6)
P 		329.8
(-2.5)
P 		325.3
(-3)
P 		53
avr 368.5
(3) 		294
(-3) 		316.8
(-1.2) 		357.2
(2.1) 		75

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 278
1 2 3 4 5 6 range
A 312.7
(-0)
P 		289
(-0.7)
P 		202.6
(-3)
P 		304.9
(-0.2)
P 		330.7
(0.5)
P 		425.3
(3)
P 		223
B 343.8
(3)
P 		319.5
(1.8)
P 		276.3
(-0.3)
P 		222.8
(-3)
P 		304
(1)
P 		259.4
(-1.2)
P 		121
C 480.4
(3)
P 		244.2
(-2.9)
P 		242.4
(-2.9)
P 		239.8
(-3)
P 		321.2
(-1)
P 		264.2
(-2.4)
P 		241
avr 379
(3) 		284.2
(-1.1) 		240.4
(-3) 		255.8
(-2.3) 		318.6
(0.4) 		316.3
(0.3) 		139
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 75
1 2 3 4 range
A 128.1
(3)
P 		63.9
(-2.1)
P 		74.7
(-1.2)
P 		52.7
(-3)
P 		75
B 119.9
(3)
P 		63.9
(-3)
P 		77.6
(-1.5)
P 		82.4
(-1)
P 		56
C 125.1
(3)
P 		94.6
(0.4)
P 		114.9
(2.1)
P 		54.8
(-3)
P 		70
avr 124.4
(3) 		74.1
(-1.9) 		89.1
(-0.5) 		63.3
(-3) 		61

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 134
1 2 3 4 5 6 range
A 57.6
(-1.6)
P 		102.8
(2.9)
P 		44.1
(-3)
P 		77.3
(0.4)
P 		99.8
(2.6)
P 		103.5
(3)
P 		59
B 119.6
(2.6)
P 		106.4
(1.4)
P 		67.1
(-2.2)
P 		59
(-3)
P 		123.5
(3)
P 		96.7
(0.5)
P 		65
C 178.1
(3)
P 		74.5
(-1.8)
P 		61.7
(-2.4)
P 		48.2
(-3)
P 		103.9
(-0.4)
P 		88.4
(-1.1)
P 		130
avr 118.4
(3) 		94.6
(0.7) 		57.6
(-3) 		61.5
(-2.6) 		109.1
(2.1) 		96.2
(0.8) 		61
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190894_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5004
Sequence Type Exemplar sequence
Representative Public ID K10B2.1 NCBI
Target Description K10B2.1 /REP_DB=WormBase Gene ID /WP=CE02008 /TR=SW:Q09990 /GB=AAA68258.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=Transducin beta chain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062884(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062884 NCBI Caenorhabditis elegans abnormal cell LINeage family member (lin-23) (lin-23) mRNA, complete cds. 11/11 A 
K10B2.1 ENSEMBL cdna:known chromosome:CEL140:II:6371252:6374489:1 gene:K10B2.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6370245-6373856(+) 97.53 100.0
Public Domain and Genome References
Gene Title Transducin beta chain
Gene Symbol lin-23
Ensembl K10B2.1
Entrez Gene 174058 Entrez gene
SwissProt Q09990 EMBL-EBI
WormBase CE28600 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.15509.1.S1_S_AT similar to F-box/WD-repeat protein 1A (F-box and WD-repeats protein beta-TrCP) (E3RSIkappaB) (pIkappaBalpha-E3 receptor subunit) cfa
DROSOPHILA_2:1635960_AT supernumerary limbs dm
DROSGENOME1:153633_AT supernumerary limbs dm
CHICKEN:GGAAFFX.4891.2.S1_S_AT similar to F-box/WD-repeat protein 1A (F-box and WD-repeats protein beta-TrCP) (E3RSIkappaB) (pIkappaBalpha-E3 receptor subunit) gga
HG-U133_PLUS_2:216091_S_AT beta-transducin repeat containing hs
HG-U133A_2:216091_S_AT beta-transducin repeat containing hs
HG-FOCUS:216091_S_AT beta-transducin repeat containing hs
HG-U133A:216091_S_AT beta-transducin repeat containing hs
HU35KSUBA:RC_AA350771_S_AT beta-transducin repeat containing hs
HU35KSUBB:RC_N58485_AT beta-transducin repeat containing hs
HG-U133B:224471_S_AT beta-transducin repeat containing hs
HG-U133_PLUS_2:224471_S_AT beta-transducin repeat containing hs
U133_X3P:G13623214_3P_S_AT beta-transducin repeat containing hs
U133_X3P:HS2.376908.1.S1_3P_AT beta-transducin repeat containing hs
U133_X3P:HS.226434.1.S1_3P_A_AT beta-transducin repeat containing hs
U133_X3P:HS.226434.0.S2_3P_AT beta-transducin repeat containing hs
U133_X3P:HS.170212.0.A1_3P_AT beta-transducin repeat containing hs
HG-U133_PLUS_2:1563620_AT beta-transducin repeat containing hs
HG-U133A_2:204901_AT beta-transducin repeat containing hs
HG-U133_PLUS_2:204901_AT beta-transducin repeat containing hs
HG-U133A:204901_AT beta-transducin repeat containing hs
HG-U133A_2:222374_AT beta-transducin repeat containing hs
HG-U133_PLUS_2:222374_AT beta-transducin repeat containing hs
HG-U133A:222374_AT beta-transducin repeat containing hs
HG-U95AV2:39303_AT beta-transducin repeat containing hs
HG-U95AV2:39304_G_AT beta-transducin repeat containing hs
HG-U95AV2:39305_AT beta-transducin repeat containing hs
HG-U95B:45239_AT beta-transducin repeat containing hs
HG-U95C:60838_AT beta-transducin repeat containing hs
HG-U95D:85189_AT beta-transducin repeat containing hs
MU11KSUBA:AA189349_S_AT beta-transducin repeat containing protein mm
MG-U74AV2:96224_AT beta-transducin repeat containing protein mm
MG-U74CV2:130852_AT beta-transducin repeat containing protein mm
MG-U74AV2:160790_S_AT beta-transducin repeat containing protein mm
MOE430A:1425680_A_AT beta-transducin repeat containing protein mm
MOUSE430A_2:1425680_A_AT beta-transducin repeat containing protein mm
MOUSE430_2:1425680_A_AT beta-transducin repeat containing protein mm
MOE430A:1417325_AT beta-transducin repeat containing protein mm
MOUSE430A_2:1417325_AT beta-transducin repeat containing protein mm
MOUSE430_2:1417325_AT beta-transducin repeat containing protein mm
MOE430B:1446925_AT beta-transducin repeat containing protein mm
MOUSE430_2:1446925_AT beta-transducin repeat containing protein mm
MOE430B:1443142_AT Beta-transducin repeat containing protein, mRNA (cDNA clone MGC:7517 IMAGE:3491843) mm
MOUSE430_2:1443142_AT Beta-transducin repeat containing protein, mRNA (cDNA clone MGC:7517 IMAGE:3491843) mm
MG-U74BV2:106119_AT Beta-transducin repeat containing protein, mRNA (cDNA clone MGC:7517 IMAGE:3491843) mm
MOE430B:1447120_AT Beta-transducin repeat containing protein, mRNA (cDNA clone MGC:7517 IMAGE:3491843) mm
MOUSE430_2:1447120_AT Beta-transducin repeat containing protein, mRNA (cDNA clone MGC:7517 IMAGE:3491843) mm
MOUSE430_2:1456780_AT Beta-transducin repeat containing protein, mRNA (cDNA clone MGC:7517 IMAGE:3491843) mm
MOE430B:1456780_AT Beta-transducin repeat containing protein, mRNA (cDNA clone MGC:7517 IMAGE:3491843) mm
MOE430B:1457305_AT Beta-transducin repeat containing protein, mRNA (cDNA clone MGC:7517 IMAGE:3491843) mm
MOUSE430_2:1457305_AT Beta-transducin repeat containing protein, mRNA (cDNA clone MGC:7517 IMAGE:3491843) mm
MU19KSUBA:TC19975_AT Beta-transducin repeat containing protein, mRNA (cDNA clone MGC:7517 IMAGE:3491843) mm
RG-U34C:RC_AI179552_AT beta-transducin repeat containing rn
RAE230A:1374654_AT beta-transducin repeat containing rn
RAT230_2:1374654_AT beta-transducin repeat containing rn
Protein Similarities
Method ID Description E-Value
blast AAA68258 Abnormal cell lineage protein 23 [Caenorhabditis elegans] ref|NP_495285.1| abnormal cell LINeage family member (lin-23) [Caenorhabditis elegans] gb|AAG28037.1| LIN-23 [Caenorhabditis elegans] sp|Q09990|LIN23_CAEEL F-box/WD-repeat protein lin-23 (Abnormal cell lineage protein 23) 0.0
blast T16607 hypothetical protein K10B2.1 - Caenorhabditis elegans 0.0
blast CAE59305 Hypothetical protein CBG02640 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 5.4E-6
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 1.8E-6
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 8.7E-11
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 7.8E-8
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 8.5E-10
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 3.4E-9
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 1.1E-11
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 1.4E-6
Sequence
Target Sequence 
>C. ELEGANS:190894_AT
gatcctcgtgcattatcttcggaaatatgcctctgctcattagttcaacatactggcaga
gtgttccgcctgcagtttgatgatttccaaattgtttcctcttcacatgatgacactatt
ctcatttgggactttttggacgctccacccagtgggcttccgtcttcaacaaacagagcc
accctcccagaacttccaaaccaagctgctgtcgctcgagctcaaatgctttttgaaatg
gctgctcgacgagaaattgagcgacgagatagagaagttgtggaagaacctgcactgagg
ccacgtgccaatgctgctcgtcgacacaatgccgatattgcagcagctgcagcagcggcg
gaagctgctagaggtgccggggacaatgatgaatcgtcatcagaggaagatctggacaga
gttgatcaggttaataatccgaacgtggctggaccagcgccaccgcaaccacacaatcag
aatcatagaaggaggcaaccaagaccagaattgcctgtcagacttatgcaagaaatggct
gcttttgacaatatgcgccgac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATCCTCGTGCATTATCTTCGGAAA 77 417 1489 Antisense
ATATGCCTCTGCTCATTAGTTCAAC 438 21 1513 Antisense
GTTCCGCCTGCAGTTTGATGATTTC 4 443 1551 Antisense
TTTCCAAATTGTTTCCTCTTCACAT 404 669 1572 Antisense
GACACTATTCTCATTTGGGACTTTT 440 367 1600 Antisense
CCAGAACTTCCAAACCAAGCTGCTG 73 273 1675 Antisense
CTGTCGCTCGAGCTCAAATGCTTTT 47 241 1697 Antisense
AAGAACCTGCACTGAGGCCACGTGC 287 153 1772 Antisense
GCTGCTAGAGGTGCCGGGGACAATG 514 297 1852 Antisense
TAATCCGAACGTGGCTGGACCAGCG 359 635 1923 Antisense
GCTGCTTTTGACAATATGCGCCGAC 61 297 2026 Antisense
Sequence Source Affymetrix Proprietary Database