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[190893_s_at]

Description AC7.1 /REP_DB=WormBase Gene ID /WP=CE20434 /TR=Q22876 /GB=AAB03418.2 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=G-protein coupled receptor
Cluster 6grp_high1_10_10 > 29      6grp_total > 16      4grp_total > 05      6grp_cgc > 21      6grp_high1_sub > Cu      6grp_cgc_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 306
1 2 3 4 range
A 116.5
(-0.9)
P 		64.1
(-2.4)
A 		45.2
(-3)
A 		250
(3)
P 		205
B 175.1
(1.3)
P 		57.8
(-3)
A 		67
(-2.7)
A 		221.9
(3)
P 		164
C 159.5
(-0.8)
P 		46.6
(-3)
A 		62
(-2.7)
A 		351.2
(3)
P 		305
avr 150.4
(-0.4) 		56.2
(-3) 		58.1
(-2.9) 		274.4
(3) 		218

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 103
1 2 3 4 5 6 range
A 108.9
(1.8)
P 		101.1
(1.1)
P 		122.4
(3)
P 		55.5
(-3)
P 		88.8
(-0)
P 		63.4
(-2.3)
A 		67
B 108.6
(3)
P 		85.3
(0.9)
P 		84.6
(0.8)
P 		42
(-3)
P 		96.6
(1.9)
P 		77.8
(0.2)
P 		67
C 144.8
(3)
P 		113.7
(0.9)
P 		113.3
(0.8)
A 		57.9
(-3)
P 		95.9
(-0.4)
P 		85
(-1.1)
P 		87
avr 120.8
(3) 		100
(1.2) 		106.8
(1.8) 		51.8
(-3) 		93.8
(0.7) 		75.4
(-0.9) 		69
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 47
1 2 3 4 range
A 42.4
(3)
P 		13.9
(-2.6)
A 		11.8
(-3)
A 		36.6
(1.9)
P 		31
B 55.8
(3)
P 		14.3
(-3)
A 		15.5
(-2.8)
A 		47.3
(1.8)
P 		42
C 52.8
(2.2)
P 		13.4
(-3)
A 		21.6
(-1.9)
A 		59.2
(3)
P 		46
avr 50.3
(3) 		13.9
(-3) 		16.3
(-2.6) 		47.7
(2.6) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 20.1
(-1.4)
P 		36
(3)
P 		26.7
(0.5)
P 		14.1
(-3)
P 		26.8
(0.5)
P 		15.4
(-2.6)
A 		22
B 37.8
(2.7)
P 		28.4
(0.7)
P 		20.5
(-1)
P 		11.1
(-3)
P 		39.2
(3)
P 		29
(0.8)
P 		28
C 53.7
(3)
P 		34.7
(0.3)
P 		28.8
(-0.6)
A 		11.7
(-3)
P 		31
(-0.2)
P 		28.4
(-0.6)
P 		42
avr 37.2
(3) 		33
(2) 		25.3
(0.1) 		12.3
(-3) 		32.3
(1.8) 		24.3
(-0.1) 		25
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 190893_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11193
Sequence Type Exemplar sequence
Representative Public ID AC7.1 NCBI
Target Description AC7.1 /REP_DB=WormBase Gene ID /WP=CE20434 /TR=Q22876 /GB=AAB03418.2 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=G-protein coupled receptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026087(11), NM_001026086(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026087 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-49) (tag-49) mRNA, complete cds. 11/11 None
NM_001026086 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-49) (tag-49) mRNA, complete cds. 11/11 None
SNAP00000001728 ENSEMBL cdna:SNAP chromosome:CEL140:IV:5113017:5115534:-1 10/11 None
GENEFINDER00000001730 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:5113017:5122009:-1 11/11 None
AC7.1 ENSEMBL cdna:known chromosome:CEL140:IV:5112919:5122009:-1 gene:AC7.1 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:5113022-5122015(-) 100.0 100.0
Public Domain and Genome References
Ensembl AC7.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAX55703 Temporarily assigned gene name protein 49, isoform b [Caenorhabditis elegans] ref|NP_001021258.1| Temporarily Assigned Gene name family member (tag-49) [Caenorhabditis elegans] 0.0
blast AAX55702 Temporarily assigned gene name protein 49, isoform a [Caenorhabditis elegans] ref|NP_001021257.1| Temporarily Assigned Gene name family member (tag-49) [Caenorhabditis elegans] 0.0
blast T30946 hypothetical protein AC7.1 - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 1.1E-20
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 8.6E-9
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 3.4E-27
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 1.5E-45
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 2.5E-42
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 3.5E-41
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 2.0E-45
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001021258.1 7 46-68,80-102,122-144,165-182,215-237,263-285,300-322
NP_001021257.1 7 46-68,80-102,122-144,165-182,215-237,272-294,309-331
AC7.1 7 46-68,80-102,122-144,165-182,245-267,302-324,339-361
SNAP00000001728 4 13-35,67-89,130-152,167-189
GENEFINDER00000001730 7 46-68,80-102,122-144,165-182,214-236,262-284,299-321
Sequence
Target Sequence 
>C. ELEGANS:190893_S_AT
gtgtctcccagtatatcctgatgctggttggtggaaaacatacaatgtctaccttgtcat
aatccaatattttgttccaatgattattcttgacactgcgtacacaatgattgctgttaa
aatatggtcattgagtcagtcaagagttgaacttgatgaaacaaaaatggcaacccagaa
gcttatgcgtactctcatcattgtcgttgcctgtttctcattgtgttggtttccattgga
gacgtatctacttttgaatgaattgaaaccggaaattaatggatggaaatacatcaattt
ggtgttcttcttttcacattggctggcgatgagcaattcttgtcttaatccaattattta
tggactttacaatacaaaatacaacgaggaatatcgtcgtttgtttcgccaaattggatg
catttggcaacggcagaaaagtttggacgattcgatgaaaccggagcgtcgttggaattc
ttca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGTCTCCCAGTATATCCTGATGCT 309 487 699 Antisense
CAATGTCTACCTTGTCATAATCCAA 380 183 741 Antisense
GACACTGCGTACACAATGATTGCTG 571 367 790 Antisense
GGCAACCCAGAAGCTTATGCGTACT 665 533 867 Antisense
TATGCGTACTCTCATCATTGTCGTT 689 655 882 Antisense
GTTGCCTGTTTCTCATTGTGTTGGT 210 441 904 Antisense
CATCAATTTGGTGTTCTTCTTTTCA 181 213 990 Antisense
TCTTCTTTTCACATTGGCTGGCGAT 355 617 1004 Antisense
GGCTGGCGATGAGCAATTCTTGTCT 328 541 1019 Antisense
ATCGTCGTTTGTTTCGCCAAATTGG 358 35 1091 Antisense
ACCGGAGCGTCGTTGGAATTCTTCA 702 87 1158 Antisense
Sequence Source Affymetrix Proprietary Database