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[190888_s_at]

Description F52G2.1B /REP_DB=WormBase Gene ID /WP=CE17847 /TR=O62255 /GB=CAB05204.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Bacterial mutT protein
Cluster 6grp_high1_10_10 > 59      6grp_total > 38      4grp_total > 07      6grp_cgc > 18      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 164
1 2 3 4 range
A 122.7
(-2.4)
P 		106.6
(-3)
A 		166.5
(-0.7)
P 		265.6
(3)
P 		159
B 210.3
(3)
P 		169.3
(-0.5)
M 		140.2
(-3)
A 		166.4
(-0.8)
P 		70
C 185.3
(1.7)
P 		101.5
(-3)
A 		164.6
(0.6)
P 		208
(3)
P 		107
avr 172.8
(0.2) 		125.8
(-3) 		157.1
(-0.9) 		213.3
(3) 		88

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 81
1 2 3 4 5 6 range
A 121.7
(-0.4)
A 		99.9
(-2.5)
P 		94.8
(-3)
P 		119.9
(-0.5)
P 		152.6
(2.7)
P 		156
(3)
P 		61
B 145.3
(1.9)
P 		160.6
(3)
P 		113.8
(-0.5)
P 		99.9
(-1.5)
A 		79.7
(-3)
M 		99
(-1.6)
P 		81
C 120.8
(0.7)
P 		144.4
(2.9)
P 		113.9
(0)
P 		81.3
(-3)
A 		123.8
(1)
P 		145.7
(3)
P 		64
avr 129.3
(2) 		135
(3) 		107.5
(-1.8) 		100.4
(-3) 		118.7
(0.2) 		133.6
(2.8) 		35
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 44.7
(3)
P 		23.1
(-3)
A 		43.5
(2.7)
P 		38.9
(1.4)
P 		22
B 67.1
(3)
P 		41.8
(-1.4)
M 		32.5
(-3)
A 		35.5
(-2.5)
P 		35
C 61.3
(3)
P 		29.2
(-3)
A 		57.4
(2.3)
P 		35.1
(-1.9)
P 		32
avr 57.7
(3) 		31.4
(-3) 		44.5
(-0) 		36.5
(-1.8) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 22.4
(-2.6)
A 		35.5
(0.5)
P 		20.6
(-3)
P 		30.4
(-0.7)
P 		46.1
(3)
P 		38
(1.1)
P 		26
B 50.6
(2.4)
P 		53.5
(3)
P 		27.6
(-2.7)
P 		26.4
(-3)
A 		32.4
(-1.7)
M 		36.9
(-0.7)
P 		27
C 44.8
(2.3)
P 		44.1
(2.1)
P 		29
(-0.7)
P 		16.4
(-3)
A 		40.1
(1.4)
P 		48.8
(3)
P 		32
avr 39.3
(1.5) 		44.4
(3) 		25.7
(-2.6) 		24.4
(-3) 		39.5
(1.5) 		41.2
(2) 		20
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 190888_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9215
Sequence Type Exemplar sequence
Representative Public ID F52G2.1B NCBI
Target Description F52G2.1B /REP_DB=WormBase Gene ID /WP=CE17847 /TR=O62255 /GB=CAB05204.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Bacterial mutT protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070207(11), NM_070208(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070207 NCBI Caenorhabditis elegans mRNA DeCAPping enzyme family member (dcap-2) (dcap-2) mRNA, complete cds. 11/11 None
NM_070208 NCBI Caenorhabditis elegans mRNA DeCAPping enzyme family member (dcap-2) (dcap-2) mRNA, complete cds. 11/11 None
SNAP00000029679 ENSEMBL cdna:SNAP chromosome:CEL140:IV:13516541:13526239:-1 11/11 None
GENEFINDER00000029687 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:13516428:13521809:-1 11/11 None
F52G2.1a ENSEMBL cdna:known chromosome:CEL140:IV:13518205:13521926:-1 gene:F52G2.1 11/11 None
F52G2.1b ENSEMBL cdna:known chromosome:CEL140:IV:13518205:13520758:-1 gene:F52G2.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:13518210-13520764(-) 100.0 100.0
Public Domain and Genome References
Ensembl F52G2.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAZ73241 RNA-decapping protein [Caenorhabditis elegans] 0.0
blast CAB05207 Hypothetical protein F52G2.2 [Caenorhabditis elegans] ref|NP_502610.1| RNAi Spreading Defective (see also sid) family member (rsd-2) [Caenorhabditis elegans] 0.0
blast CAE58589 Hypothetical protein CBG01756 [Caenorhabditis briggsae] 1.0E-179
blast CAE58589 Hypothetical protein CBG01756 [Caenorhabditis briggsae] 1.0E-178
blast CAB05204 Hypothetical protein F52G2.1b [Caenorhabditis elegans] ref|NP_502609.1| mRNA DeCAPping enzyme family member (dcap-2) [Caenorhabditis elegans] 1.0E-176
blast CAB05206 Hypothetical protein F52G2.1a [Caenorhabditis elegans] ref|NP_502608.1| mRNA DeCAPping enzyme family member (dcap-2) [Caenorhabditis elegans] sp|O62255|NDX5_CAEEL Putative nudix hydrolase 5 (mRNA decapping enzyme 2 homolog) 1.0E-170
blast CAB05206 Hypothetical protein F52G2.1a [Caenorhabditis elegans] ref|NP_502608.1| mRNA DeCAPping enzyme family member (dcap-2) [Caenorhabditis elegans] sp|O62255|NDX5_CAEEL Putative nudix hydrolase 5 (mRNA decapping enzyme 2 homolog) 1.0E-161
Protein Domains
Database ID Description E-Value
Pfam IPR007722 EMBL-EBI Dcp2, box A 2.3E-65
Pfam IPR000086 EMBL-EBI NUDIX hydrolase 1.1E-13
Pfam IPR007722 EMBL-EBI Dcp2, box A 2.3E-65
Pfam IPR000086 EMBL-EBI NUDIX hydrolase 1.1E-13
Pfam IPR007722 EMBL-EBI Dcp2, box A 2.3E-65
Pfam IPR000086 EMBL-EBI NUDIX hydrolase 2.7E-19
Pfam IPR007722 EMBL-EBI Dcp2, box A 2.3E-65
Pfam IPR000086 EMBL-EBI NUDIX hydrolase 2.7E-19
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502608.1 1 7-29
F52G2.1a 1 7-29
Sequence
Target Sequence 
>C. ELEGANS:190888_S_AT
atataaaggcccacggattccgacagatatacttgatgaattggaatttagatttattag
taatatggttgagtgtgagatcaatgataacattcgcgtttgctttcatcttgaacttgc
tcattggtactacatagatcatatggttgaagatgacaaaatcagtggatgcccgaatgt
cggttctcgtgatttcaattttcaaatgtgccagcattgcagagttttgagaaaatatgc
tcatcgagctgatgaagttcttgccaagttccgtgaatacaaatcaacagttccaacgta
cggagcaattcttgtcgatccggaaatggaccacgtcgtacttgttcaatcgtattttgc
aaaaggaaaaaattggggatttccgaaaggaaaaatcaatcaggcagagccaccgagaga
tgcggcgattcgagagacttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATATAAAGGCCCACGGATTCCGACA 4 5 441 Antisense
TAACATTCGCGTTTGCTTTCATCTT 403 639 528 Antisense
GAACTTGCTCATTGGTACTACATAG 212 349 553 Antisense
GATGCCCGAATGTCGGTTCTCGTGA 66 415 608 Antisense
CATCGAGCTGATGAAGTTCTTGCCA 553 211 682 Antisense
GTTCTTGCCAAGTTCCGTGAATACA 161 443 697 Antisense
AACGTACGGAGCAATTCTTGTCGAT 191 143 735 Antisense
GTCGATCCGGAAATGGACCACGTCG 71 473 754 Antisense
GACCACGTCGTACTTGTTCAATCGT 421 383 769 Antisense
GGCAGAGCCACCGAGAGATGCGGCG 646 535 843 Antisense
GAGATGCGGCGATTCGAGAGACTTT 200 395 857 Antisense
Sequence Source Affymetrix Proprietary Database