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[190886_at] UDP-glucuronosyltransferase

Description M88.1 /REP_DB=WormBase Gene ID /WP=CE01036 /TR=Q21603 /GB=CAA84336.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=UDP-glucuronosyltransferase
Cluster 6grp_highest_10_10 > 01      6grp_high1_10_10 > 10      4grp_highest_8_8 > 18      4grp_high_8_8 > 62      6grp_highest_nonorm > 42      6grp_total > 50      4grp_total > 58      6grp_cgc > 60      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1296
1 2 3 4 range
A 706.3
(-0.7)
P 		1169.3
(2.2)
P 		1303.4
(3)
P 		329
(-3)
P 		974
B 743.6
(-1)
P 		1015.5
(0.3)
P 		1586.6
(3)
P 		325.3
(-3)
P 		1261
C 848
(-0)
P 		1230
(2)
P 		1419.4
(3)
P 		290.2
(-3)
P 		1129
avr 766
(-0.6) 		1138.3
(1.4) 		1436.5
(3) 		314.8
(-3) 		1122

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 909
1 2 3 4 5 6 range
A 1290.2
(3)
P 		730.6
(-0.7)
P 		1103.8
(1.8)
P 		1162.4
(2.2)
P 		623.1
(-1.4)
P 		380.9
(-3)
P 		909
B 1018.2
(2.5)
P 		1018.1
(2.5)
P 		1074.3
(3)
P 		1058.2
(2.9)
P 		689.8
(-0.5)
P 		417.3
(-3)
P 		657
C 1198
(2.7)
P 		886.7
(0.3)
P 		804.8
(-0.4)
P 		1235.1
(3)
P 		685.8
(-1.3)
P 		465
(-3)
P 		770
avr 1168.8
(3) 		878.5
(0.7) 		994.3
(1.6) 		1151.9
(2.9) 		666.2
(-1) 		421.1
(-3) 		748
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 447
1 2 3 4 range
A 257.2
(1.3)
P 		253.8
(1.2)
P 		340.7
(3)
P 		48.2
(-3)
P 		293
B 237.1
(0.4)
P 		250.8
(0.6)
P 		367.7
(3)
P 		69.3
(-3)
P 		298
C 280.7
(0.1)
P 		353.6
(1.1)
P 		494.7
(3)
P 		48.9
(-3)
P 		446
avr 258.3
(0.5) 		286.1
(1) 		401
(3) 		55.5
(-3) 		346

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 351
1 2 3 4 5 6 range
A 237.8
(1.3)
P 		259.8
(2)
P 		240.4
(1.4)
P 		294.8
(3)
P 		188
(-0.2)
P 		92.7
(-3)
P 		202
B 354.3
(3)
P 		338.9
(2.5)
P 		260.9
(0.2)
P 		280.3
(0.8)
P 		280.3
(0.8)
P 		155.6
(-3)
P 		199
C 444
(3)
P 		270.6
(-0.6)
P 		204.8
(-2)
P 		248.4
(-1.1)
P 		221.9
(-1.6)
P 		155.7
(-3)
P 		288
avr 345.4
(3) 		289.8
(1.4) 		235.4
(-0.1) 		274.5
(1) 		230.1
(-0.3) 		134.7
(-3) 		211
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190886_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8030
Sequence Type Exemplar sequence
Representative Public ID M88.1 NCBI
Target Description M88.1 /REP_DB=WormBase Gene ID /WP=CE01036 /TR=Q21603 /GB=CAA84336.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=UDP-glucuronosyltransferase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065517(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065517 NCBI Caenorhabditis elegans M88.1 (UDP-glucuronosyltransferase) mRNA, complete cds. 11/11 None
SNAP00000031336 ENSEMBL cdna:SNAP chromosome:CEL140:III:4537339:4540586:-1 11/11 None
GENEFINDER00000031346 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:4537339:4540586:-1 11/11 None
M88.1.2 ENSEMBL cdna:known chromosome:CEL140:III:4537242:4540588:-1 gene:M88.1 11/11 None
M88.1.1 ENSEMBL cdna:known chromosome:CEL140:III:4537242:4540602:-1 gene:M88.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4537338-4540586(-) 100.0 100.0
Public Domain and Genome References
Gene Title UDP-glucuronosyltransferase
Gene Symbol ugt-62
Ensembl M88.1
Entrez Gene 175591 Entrez gene
SwissProt Q21603 EMBL-EBI
WormBase CE01036 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1625873_AT dm
DROSGENOME1:147609_AT dm
HUGENEFL:J05428_AT UDP glucuronosyltransferase 2 family, polypeptide B7 hs
HG-U95AV2:41376_I_AT UDP glucuronosyltransferase 2 family, polypeptide B7 hs
HG-U95AV2:41377_F_AT UDP glucuronosyltransferase 2 family, polypeptide B7 hs
HG-U95E:84407_R_AT UDP glucuronosyltransferase 2 family, polypeptide B7 hs
MG-U74BV2:111481_AT UDP glucuronosyltransferase 2 family, polypeptide B36 mm
MG-U74BV2:112764_AT UDP glucuronosyltransferase 2 family, polypeptide B36 mm
MOE430B:1455595_AT UDP glucuronosyltransferase 2 family, polypeptide B36 mm
MOUSE430_2:1455595_AT UDP glucuronosyltransferase 2 family, polypeptide B36 mm
RT-U34:U06273_I_AT UDP glycosyltransferase 2 family, polypeptide B4 rn
RG-U34A:U06273_I_AT UDP glycosyltransferase 2 family, polypeptide B4 rn
RT-U34:U06274_S_AT UDP glycosyltransferase 2 family, polypeptide B4 rn
RG-U34A:U06274_S_AT UDP glycosyltransferase 2 family, polypeptide B4 rn
RAE230A:1368397_AT UDP glycosyltransferase 2 family, polypeptide B4 rn
RAT230_2:1368397_AT UDP glycosyltransferase 2 family, polypeptide B4 rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16758 transferase activity, transferring hexosyl groups inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA84336 Hypothetical protein M88.1 [Caenorhabditis elegans] ref|NP_497918.1| M88.1 [Caenorhabditis elegans] 0.0
blast CAE71190 Hypothetical protein CBG18047 [Caenorhabditis briggsae] 0.0
blast AAB65327 Udp-glucuronosyltransferase protein 61 [Caenorhabditis elegans] ref|NP_504274.2| F39G3.1 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 3.3E-63
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_497918.1 2 5-27,493-512
M88.1.2 2 5-27,493-512
M88.1.1 2 5-27,493-512
SNAP00000031336 2 5-27,493-512
GENEFINDER00000031346 2 5-27,493-512
Sequence
Target Sequence 
>C. ELEGANS:190886_AT
ttctcctcacttccagattatcaatttttaatgagatatgtggctgatgatttgaatgat
agattgccaaagaatgttcatttattcaaatggcttccacagaaagatctattgttgcat
aataagactaaagcattcattactcacggaggttataattctatgcaggaggcaatttct
gctggagttccactggtcactattgcactatttggtgatcaacccaaaaattccaaagtt
gcaaaaaaacatggatttgctgtaaacattcaaaaaggcgaaatttcaaagaaaacgatt
gtaaaagcaattatggaaattgtggagaatgacagttacaaacaaaaagtgagtcgacta
tctgcaatggttcgtgctcaaccaatgaaaccagctgaacgacttctaaaatggtcagaa
ttccttgccgaattcaaaactcttgataatttggagccagctggtcaaaagcttaacttc
ttccaatatcattcacttgatgtaattacattccttttcattgttattttcattgtattt
tatattggataccgtttcatgagagctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCTCCTCACTTCCAGATTATCAAT 7 695 988 Antisense
GACTAAAGCATTCATTACTCACGGA 502 371 1113 Antisense
AATTTCTGCTGGAGTTCCACTGGTC 394 175 1161 Antisense
TCCACTGGTCACTATTGCACTATTT 547 587 1176 Antisense
GTGAGTCGACTATCTGCAATGGTTC 435 483 1336 Antisense
GTTCGTGCTCAACCAATGAAACCAG 182 443 1357 Antisense
TGAAACCAGCTGAACGACTTCTAAA 394 571 1373 Antisense
AAAATGGTCAGAATTCCTTGCCGAA 206 133 1395 Antisense
AGCTTAACTTCTTCCAATATCATTC 115 79 1457 Antisense
GATGTAATTACATTCCTTTTCATTG 290 409 1486 Antisense
ATTGGATACCGTTTCATGAGAGCTG 262 3 1531 Antisense
Sequence Source Affymetrix Proprietary Database