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[190882_s_at]

Description R11D1.1B /REP_DB=WormBase Gene ID /WP=CE21120 /TR=Q21934 /GB=CAA99909.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=WD domain, G-beta repeat
Cluster 6grp_high1_10_10 > 87      6grp_total > 87      4grp_total > 05      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 100
1 2 3 4 range
A 82.1
(-1.1)
P 		59.9
(-3)
A 		69.4
(-2.2)
P 		130.8
(3)
P 		71
B 58.3
(-0.5)
P 		50
(-1.3)
A 		32
(-3)
A 		95.1
(3)
P 		63
C 80.9
(0.3)
P 		30.8
(-3)
A 		54.8
(-1.4)
A 		121.6
(3)
P 		91
avr 73.8
(-0.7) 		46.9
(-3) 		52.1
(-2.5) 		115.8
(3) 		69

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 104
1 2 3 4 5 6 range
A 37.2
(-3)
A 		63.5
(-1.5)
P 		55.9
(-1.9)
P 		91.7
(0.1)
P 		53
(-2.1)
P 		141.4
(3)
P 		104
B 70.8
(-0.3)
P 		42.6
(-3)
P 		62.9
(-1.1)
P 		67.3
(-0.6)
P 		83.4
(0.9)
P 		105.1
(3)
P 		63
C 60.7
(-2.1)
P 		51.4
(-2.8)
P 		48.2
(-3)
P 		59.9
(-2.1)
P 		109
(1.4)
P 		130.5
(3)
P 		82
avr 56.2
(-2.7) 		52.5
(-3) 		55.7
(-2.7) 		73
(-1.3) 		81.8
(-0.6) 		125.7
(3) 		73
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 29.9
(3)
P 		13
(-3)
A 		18.1
(-1.2)
P 		19.1
(-0.8)
P 		17
B 18.6
(2.2)
P 		12.3
(-0.7)
A 		7.4
(-3)
A 		20.3
(3)
P 		13
C 26.8
(3)
P 		8.9
(-3)
A 		19.1
(0.4)
A 		20.5
(0.9)
P 		18
avr 25.1
(3) 		11.4
(-3) 		14.9
(-1.5) 		20
(0.8) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 6.9
(-3)
A 		22.6
(0.4)
P 		12.2
(-1.8)
P 		23.3
(0.6)
P 		16
(-1)
P 		34.4
(3)
P 		28
B 24.6
(-0.5)
P 		14.2
(-3)
P 		15.3
(-2.7)
P 		17.8
(-2.1)
P 		33.9
(1.7)
P 		39.2
(3)
P 		25
C 22.5
(-1)
P 		15.7
(-2.3)
P 		12.3
(-2.9)
P 		12
(-3)
P 		35.3
(1.4)
P 		43.7
(3)
P 		32
avr 18
(-1.9) 		17.5
(-2) 		13.3
(-3) 		17.7
(-2) 		28.4
(0.5) 		39.1
(3) 		26
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 190882_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12777
Sequence Type Exemplar sequence
Representative Public ID R11D1.1B NCBI
Target Description R11D1.1B /REP_DB=WormBase Gene ID /WP=CE21120 /TR=Q21934 /GB=CAA99909.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=WD domain, G-beta repeat
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073770(11), NM_073771(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073770 NCBI Caenorhabditis elegans R11D1.1b (R11D1.1) mRNA, complete cds. 11/11 None
NM_073771 NCBI Caenorhabditis elegans R11D1.1a (R11D1.1) mRNA, complete cds. 11/11 None
SNAP00000040849 ENSEMBL cdna:SNAP chromosome:CEL140:V:12706979:12710154:1 11/11 None
GENEFINDER00000040864 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:12706979:12710154:1 11/11 None
R11D1.1b.2 ENSEMBL cdna:known chromosome:CEL140:V:12706970:12710154:1 gene:R11D1.1 11/11 None
R11D1.1b.1 ENSEMBL cdna:known chromosome:CEL140:V:12706972:12710154:1 gene:R11D1.1 11/11 None
R11D1.1a ENSEMBL cdna:known chromosome:CEL140:V:12706979:12710289:1 gene:R11D1.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12706978-12710154(+) 100.0 100.0
Public Domain and Genome References
Ensembl R11D1.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA99909 Hypothetical protein R11D1.1b [Caenorhabditis elegans] ref|NP_506171.2| R11D1.1b [Caenorhabditis elegans] 0.0
blast CAA99908 Hypothetical protein R11D1.1a [Caenorhabditis elegans] ref|NP_506172.2| R11D1.1a [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 4.5E-8
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.67
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 1.4E-6
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 5.8E-5
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.67
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 1.4E-6
Sequence
Target Sequence 
>C. ELEGANS:190882_S_AT
gggtggtggaagatgcactggatcttaatggagaaatggatggaagagcctgttggagag
acattttcggtggtgatgcacgtactgctgaagatagagacacgctggaaatgtttgatc
cacgtggtcacggtgacgacgaggaagatgttgaagaaagtagttccgaagattctgatg
atatgatggacaatgaggcagacgataatcattatttcagaagacgaagaggaccattac
aattgtttgttcgcgctggagaagaacacttggctcgaatgttggaagaacatgatggag
ttgagaatgacttgttggaagagttgttcaacatgagaagaaggtttcgcgaggaaagtt
ctgatgaggatgattccggagatgacggagaaaatggagatgaaaacgataatgaaaatg
ataacattgaatcttcatcaagtaactccgactcgagtgatgccagcgaagttggggact
tgatggactttgatgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGTGGTGGAAGATGCACTGGATCT 675 497 1304 Antisense
GTTGGAGAGACATTTTCGGTGGTGA 700 435 1355 Antisense
TCGGTGGTGATGCACGTACTGCTGA 133 607 1370 Antisense
GTACTGCTGAAGATAGAGACACGCT 638 457 1385 Antisense
ATGTTTGATCCACGTGGTCACGGTG 158 43 1414 Antisense
TACAATTGTTTGTTCGCGCTGGAGA 60 641 1541 Antisense
GGAGAAGAACACTTGGCTCGAATGT 170 519 1561 Antisense
ATCTTCATCAAGTAACTCCGACTCG 656 31 1734 Antisense
CTCCGACTCGAGTGATGCCAGCGAA 600 233 1749 Antisense
GATGCCAGCGAAGTTGGGGACTTGA 519 413 1762 Antisense
TGGGGACTTGATGGACTTTGATGGA 434 551 1776 Antisense
Sequence Source Affymetrix Proprietary Database