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[190879_at] UDP-glucuronosyltransferase

Description AC3.7 /REP_DB=WormBase Gene ID /WP=CE05137 /TR=Q17403 /GB=CAA94870.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=UDP-glucuronosyltransferase
Cluster 6grp_high1_10_10 > 93      6grp_total > 95      4grp_total > 09      6grp_cgc > 78      6grp_high1_sub > 04      6grp_cgc_sub > In      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 496
1 2 3 4 range
A 44.2
(-3)
A 		101.1
(-2.3)
A 		68.7
(-2.7)
P 		540.5
(3)
P 		496
B 81.9
(-3)
M 		100.4
(-2.7)
A 		161.1
(-1.8)
A 		475.1
(3)
P 		393
C 49.7
(-3)
A 		126
(-1.9)
A 		131.4
(-1.8)
A 		467.7
(3)
P 		418
avr 58.6
(-3) 		109.2
(-2.3) 		120.4
(-2.1) 		494.4
(3) 		436

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 389
1 2 3 4 5 6 range
A 237.1
(-0.2)
P 		94.8
(-3)
P 		111.6
(-2.7)
M 		333.9
(1.6)
P 		371
(2.3)
P 		405
(3)
P 		310
B 167.6
(-1)
P 		71
(-3)
A 		141.8
(-1.5)
P 		311.7
(2.1)
P 		354.3
(3)
P 		343.1
(2.8)
P 		283
C 121.1
(-2.6)
P 		114.2
(-2.7)
P 		98
(-3)
A 		333.8
(0.9)
P 		459.8
(3)
P 		408.3
(2.1)
P 		362
avr 175.3
(-1.4) 		93.3
(-3) 		117.1
(-2.5) 		326.5
(1.6) 		395
(3) 		385.5
(2.8) 		302
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 85
1 2 3 4 range
A 16.1
(-3)
A 		22
(-2.4)
A 		18
(-2.8)
P 		79.1
(3)
P 		63
B 26.1
(-2.9)
M 		24.8
(-3)
A 		37.3
(-2)
A 		101.2
(3)
P 		76
C 16.5
(-3)
A 		36.2
(-1.1)
A 		45.8
(-0.2)
A 		78.9
(3)
P 		62
avr 19.6
(-3) 		27.7
(-2.3) 		33.7
(-1.7) 		86.4
(3) 		67

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 125
1 2 3 4 5 6 range
A 43.7
(-1.7)
P 		33.7
(-2.4)
P 		24.3
(-3)
M 		84.7
(1.1)
P 		111.9
(3)
P 		98.6
(2.1)
P 		88
B 58.3
(-1.3)
P 		23.6
(-3)
A 		34.4
(-2.5)
P 		82.6
(-0.1)
P 		143.9
(3)
P 		127.9
(2.2)
P 		120
C 44.9
(-2)
P 		34.9
(-2.5)
P 		25
(-3)
A 		67.1
(-1)
P 		148.8
(3)
P 		136.7
(2.4)
P 		124
avr 49
(-1.8) 		30.7
(-2.8) 		27.9
(-3) 		78.1
(-0.2) 		134.9
(3) 		121.1
(2.2) 		107
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190879_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11835
Sequence Type Exemplar sequence
Representative Public ID AC3.7 NCBI
Target Description AC3.7 /REP_DB=WormBase Gene ID /WP=CE05137 /TR=Q17403 /GB=CAA94870.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=UDP-glucuronosyltransferase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073270(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073270 NCBI Caenorhabditis elegans AC3.7 (UDP-glucuronosyltransferase) mRNA, complete cds. 11/11 None
SNAP00000028839 ENSEMBL cdna:SNAP chromosome:CEL140:V:10398387:10400316:1 11/11 None
GENEFINDER00000028843 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:10398297:10400316:1 11/11 None
AC3.7 ENSEMBL cdna:known chromosome:CEL140:V:10398262:10400316:1 gene:AC3.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10398296-10400316(+) 100.0 100.0
Public Domain and Genome References
Gene Title UDP-glucuronosyltransferase
Gene Symbol ugt-1
Ensembl AC3.7
Entrez Gene 179449 Entrez gene
SwissProt Q17403 EMBL-EBI
WormBase CE05137 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16758 transferase activity, transferring hexosyl groups inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA94870 Hypothetical protein AC3.7 [Caenorhabditis elegans] ref|NP_505671.1| AC3.7 [Caenorhabditis elegans] 0.0
blast CAE58123 Hypothetical protein CBG01211 [Caenorhabditis briggsae] 0.0
blast CAA94871 Hypothetical protein AC3.8 [Caenorhabditis elegans] ref|NP_505672.2| AC3.8 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 1.2E-23
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 1.3E-22
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 4.1E-23
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505671.1 2 5-27,496-518
AC3.7 2 5-27,496-518
SNAP00000028839 1 466-488
GENEFINDER00000028843 2 5-27,500-522
Sequence
Target Sequence 
>C. ELEGANS:190879_AT
tcaaaatgttccatcttctaccagataccactttcatctggaagtatgaagtagaagatc
aacaattcattgaaaggctcccgaataatgcgattctgaagaaatgggttcctcagccag
ctctgcttgctgatcctcgactgaaactcttcgtaactcatggtggtctcggcagtactt
tagaagttgcatactctggaaagcctgccctaatgattccagtgttcggagatcaattat
tgaatgcaaaaatgttgagtagacatggtggtgctactgtttttgataaatatgatttgg
aagatgccgaaaaattgacatctgcaattaaagagattatcggaaatgaagaattcaaca
aaaaatcacatcatattgctgatcttctaagaaatcaaccaattgatccaaaagcaaatc
ttctgaaacacgtggagttcagtgcaaaatttggaagagttgatgctttggaaccataca
atgttcactacaactttgttcagtactacatgttagatgcttttgccattattttttcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAAAATGTTCCATCTTCTACCAGA 8 631 977 Antisense
TCTTCTACCAGATACCACTTTCATC 555 615 990 Antisense
AAGGCTCCCGAATAATGCGATTCTG 399 159 1050 Antisense
GAAGAAATGGGTTCCTCAGCCAGCT 243 339 1074 Antisense
AACTCTTCGTAACTCATGGTGGTCT 331 141 1121 Antisense
ATGGTGGTCTCGGCAGTACTTTAGA 617 49 1136 Antisense
GTTGCATACTCTGGAAAGCCTGCCC 475 439 1162 Antisense
AAGCCTGCCCTAATGATTCCAGTGT 543 149 1177 Antisense
GACATGGTGGTGCTACTGTTTTTGA 538 369 1238 Antisense
GTTCACTACAACTTTGTTCAGTACT 477 443 1459 Antisense
GATGCTTTTGCCATTATTTTTTCAA 456 413 1492 Antisense
Sequence Source Affymetrix Proprietary Database