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[190878_at]

Description F46A9.3 /REP_DB=WormBase Gene ID /WP=CE10576 /TR=Q93732 /GB=CAB03109.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=potassium channel protein
Cluster 4grp_highest_8_8 > 56      4grp_high_8_8 > 34      6grp_total > 12      4grp_total > 45      6grp_cgc > 62      6grp_cgc_sub > 02      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 231
1 2 3 4 range
A 478.7
(3)
P 		446.2
(2.1)
P 		263.2
(-3)
P 		346.7
(-0.7)
P 		216
B 458.5
(3)
P 		389.2
(0.8)
P 		267.5
(-3)
P 		311.2
(-1.6)
P 		191
C 469.2
(3)
P 		373.2
(0.4)
P 		250.3
(-2.9)
P 		247.3
(-3)
P 		222
avr 468.8
(3) 		402.9
(1.1) 		260.3
(-3) 		301.7
(-1.8) 		209

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 566
1 2 3 4 5 6 range
A 396.5
(0.6)
P 		585.4
(3)
P 		368
(0.3)
P 		349.9
(0)
P 		174.8
(-2.2)
P 		107.2
(-3)
A 		478
B 483.8
(1.3)
P 		641.4
(3)
P 		493.2
(1.4)
P 		320.2
(-0.5)
P 		270.8
(-1.1)
P 		94
(-3)
A 		547
C 317.2
(-0.7)
P 		659.6
(3)
P 		377.2
(-0.1)
P 		350.4
(-0.4)
P 		158.2
(-2.4)
P 		107.3
(-3)
A 		552
avr 399.2
(0.4) 		628.8
(3) 		412.8
(0.5) 		340.2
(-0.3) 		201.3
(-1.9) 		102.8
(-3) 		526
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 133
1 2 3 4 range
A 174.3
(3)
P 		96.9
(-0.8)
P 		68.8
(-2.1)
P 		50.7
(-3)
P 		124
B 146.2
(3)
P 		96.1
(-0.6)
P 		62
(-3)
P 		66.3
(-2.7)
P 		84
C 155.3
(3)
P 		107.3
(0.5)
P 		87.2
(-0.6)
P 		41.7
(-3)
P 		114
avr 158.6
(3) 		100.1
(-0.3) 		72.7
(-1.9) 		52.9
(-3) 		106

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 187
1 2 3 4 5 6 range
A 73.1
(-1.5)
P 		208.2
(3)
P 		80.2
(-1.2)
P 		88.7
(-0.9)
P 		52.8
(-2.1)
P 		26.1
(-3)
A 		182
B 168.3
(1.5)
P 		213.5
(3)
P 		119.8
(-0.2)
P 		84.8
(-1.3)
P 		110
(-0.5)
P 		35.1
(-3)
A 		178
C 117.6
(-0)
P 		201.3
(3)
P 		96
(-0.8)
P 		70.5
(-1.7)
P 		51.2
(-2.4)
P 		35.9
(-3)
A 		165
avr 119.7
(-0) 		207.7
(3) 		98.7
(-0.7) 		81.3
(-1.3) 		71.3
(-1.7) 		32.4
(-3) 		175
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190878_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.770
Sequence Type Exemplar sequence
Representative Public ID F46A9.3 NCBI
Target Description F46A9.3 /REP_DB=WormBase Gene ID /WP=CE10576 /TR=Q93732 /GB=CAB03109.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=potassium channel protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026297(11), NM_001026296(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026297 NCBI Caenorhabditis elegans TWiK family of potassium channels family member (twk-29) (twk-29) mRNA, complete cds. 11/11 None
NM_001026296 NCBI Caenorhabditis elegans TWiK family of potassium channels family member (twk-29) (twk-29) mRNA, complete cds. 11/11 None
GENEFINDER00000008782 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:9473003:9476976:1 9/11 None
F46A9.3 ENSEMBL cdna:known chromosome:CEL140:I:9473003:9476976:1 gene:F46A9.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000008777 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:9472933-9476907(+) 100.0 100.0
Public Domain and Genome References
Ensembl F46A9.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAI79227 Hypothetical protein F46A9.3b [Caenorhabditis elegans] ref|NP_001021468.1| TWiK family of potassium channels family member (twk-29) [Caenorhabditis elegans] 0.0
blast CAB03109 Hypothetical protein F46A9.3a [Caenorhabditis elegans] ref|NP_001021467.1| TWiK family of potassium channels family member (twk-29) [Caenorhabditis elegans] 0.0
blast CAE60195 Hypothetical protein CBG03756 [Caenorhabditis briggsae] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001021468.1 5 20-42,102-121,136-158,179-201,239-261
NP_001021467.1 5 49-71,131-150,165-187,208-230,268-290
F46A9.3 5 49-71,131-150,165-187,208-230,268-290
GENEFINDER00000008782 4 49-71,131-150,165-187,208-230
Sequence
Target Sequence 
>C. ELEGANS:190878_AT
gttttctacatgtgcacgggacttgccatatcaactattgctttagatattggatcaatt
tatgttcgaaagctacattttattggcaaaaaaataaaaaacattgccaacattcggatt
tggttcggtgccaggaatttggaagtacgagaactcatcacagcagttggacagaatatt
ggaattgatcagaatgtgatagcagacatagatattgatacattggttaaaacagcaatt
caagtgaaattgggaagactttcaagagttcctcaaacacatatgattgttgagggaata
tggcctccagaacttgttcctctttttatgaaagatggtcaattcccactttttgtcgat
tcggaagatgatctcactgatatgaggcctaagaaattttcagttcattttgaagatgaa
ccaatgatgtctgaaatagaggatacatctgattctgaaacagctgctgataaatcacaa
accacatcgtcccgattgtctccaattccacgccgaagagcaatgcaagccaaattgaat
ggttcaactgactcagatcaagcttgccacgacggcgttatga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTTTCTACATGTGCACGGGACTTG 560 447 901 Antisense
GGGACTTGCCATATCAACTATTGCT 194 495 918 Antisense
CATTCGGATTTGGTTCGGTGCCAGG 345 203 1011 Antisense
GAGAACTCATCACAGCAGTTGGACA 123 393 1049 Antisense
GAAGACTTTCAAGAGTTCCTCAAAC 615 325 1154 Antisense
AATATGGCCTCCAGAACTTGTTCCT 301 173 1197 Antisense
GAAAGATGGTCAATTCCCACTTTTT 190 359 1230 Antisense
GATAAATCACAAACCACATCGTCCC 373 423 1369 Antisense
TCTCCAATTCCACGCCGAAGAGCAA 507 609 1399 Antisense
AACTGACTCAGATCAAGCTTGCCAC 467 141 1446 Antisense
CAAGCTTGCCACGACGGCGTTATGA 709 185 1459 Antisense
Sequence Source Affymetrix Proprietary Database