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[190874_at] steroid hormone receptor

Description R03A10.6 /REP_DB=WormBase Gene ID /WP=CE25963 /TR=Q21659 /GB=CAA93674.2 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=steroid hormone receptor
Cluster 6grp_total > 28      4grp_total > 22      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 78
1 2 3 4 range
A 70
(2.6)
A 		57.3
(0.8)
A 		31
(-3)
A 		72.8
(3)
A 		42
B 76.9
(3)
A 		35.1
(-0.6)
A 		6.6
(-3)
A 		59.7
(1.5)
A 		70
C 75.7
(2.1)
A 		26.6
(-2.9)
A 		25.7
(-3)
A 		84.1
(3)
P 		58
avr 74.2
(3) 		39.7
(-0.9) 		21.1
(-3) 		72.2
(2.8) 		53

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 83
1 2 3 4 5 6 range
A 90.4
(3)
A 		65.5
(0.3)
A 		35.5
(-3)
A 		35.2
(-3)
A 		79.7
(1.8)
A 		88.9
(2.8)
A 		55
B 90
(3)
A 		38.6
(-0.7)
A 		36.6
(-0.9)
A 		7.3
(-3)
A 		38.8
(-0.7)
A 		28.2
(-1.5)
A 		83
C 60.2
(0.8)
A 		89.6
(3)
A 		43.9
(-0.4)
A 		8.8
(-3)
A 		55.8
(0.5)
A 		32.5
(-1.2)
A 		81
avr 80.2
(3) 		64.6
(1.5) 		38.7
(-0.9) 		17.1
(-3) 		58.1
(0.9) 		49.9
(0.1) 		63
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 25.5
(3)
A 		12.4
(-1.5)
A 		8.1
(-3)
A 		10.6
(-2.1)
A 		17
B 24.5
(3)
A 		8.7
(-1.1)
A 		1.5
(-3)
A 		12.7
(-0.1)
A 		23
C 25.1
(3)
A 		7.6
(-3)
A 		8.9
(-2.6)
A 		14.2
(-0.7)
P 		18
avr 25
(3) 		9.6
(-1.9) 		6.2
(-3) 		12.5
(-1) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 16.7
(0.3)
A 		23.3
(2.7)
A 		7.7
(-3)
A 		8.9
(-2.6)
A 		24
(3)
A 		21.6
(2.1)
A 		16
B 31.3
(3)
A 		12.8
(-0.8)
A 		8.9
(-1.6)
A 		1.9
(-3)
A 		15.8
(-0.2)
A 		10.5
(-1.2)
A 		29
C 22.3
(1.8)
A 		27.3
(3)
A 		11.2
(-0.8)
A 		1.8
(-3)
A 		18
(0.8)
A 		10.9
(-0.9)
A 		26
avr 23.4
(3) 		21.1
(2.3) 		9.3
(-1.4) 		4.2
(-3) 		19.3
(1.7) 		14.3
(0.2) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190874_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18001
Sequence Type Exemplar sequence
Representative Public ID R03A10.6 NCBI
Target Description R03A10.6 /REP_DB=WormBase Gene ID /WP=CE25963 /TR=Q21659 /GB=CAA93674.2 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=steroid hormone receptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078154(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078154 NCBI Caenorhabditis elegans R03A10.6 (R03A10.6) mRNA, complete cds. 11/11 None
R03A10.6 ENSEMBL cdna:known chromosome:CEL140:X:15466218:15468459:1 gene:R03A10.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000023419 4/11 Cross Hyb Matching Probes None
GENEFINDER00000007505 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:15466264-15468459(+) 100.0 100.0
Public Domain and Genome References
Gene Title steroid hormone receptor
Ensembl R03A10.6
Entrez Gene 3564903 Entrez gene
SwissProt Q21659 EMBL-EBI
WormBase CE25963 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7186 G-protein coupled receptor protein signaling pathway inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
1584 rhodopsin-like receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAC14271 Hypothetical protein R03A10.6 [Caenorhabditis elegans] emb|CAA93674.2| Hypothetical protein R03A10.6 [Caenorhabditis elegans] ref|NP_510555.1| R03A10.6 [Caenorhabditis elegans] 0.0
blast CAE63316 Hypothetical protein CBG07706 [Caenorhabditis briggsae] 0.0
blast AAF46037 CG16752-PA [Drosophila melanogaster] ref|NP_572225.1| CG16752-PA [Drosophila melanogaster] gb|AAM12257.1| RE15519p [Drosophila melanogaster] 4.0E-38
Protein Domains
Database ID Description E-Value
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 4.6E-8
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510555.1 7 7-29,33-55,67-89,109-131,158-177,221-243,310-332
R03A10.6 7 7-29,33-55,67-89,109-131,158-177,221-243,310-332
Sequence
Target Sequence 
>C. ELEGANS:190874_AT
aattatgtacacacctgacctcatggcattccataataaaagccacgatgtgtttgacag
caagagaaatcgaactatgaagctttgctatcgacatcgtgctccattcatgttgaaact
cggtgatgacatttactacaaagtgatgttcacaacacaaaccgtcgccgttcatctcat
cccgtctgtgctgcttgtcattttcacatggaaactggtgggcgccattagggtggcaga
ccgccgtcacgccaatcttctctccaagtattccacgacgactcgttcgacgcgacgaaa
gttctccgagctgacgaattcgtcggagaacgaaaataaaataactcgattgttcaagca
gcgcgacagcgtcagtgtgggtaacgaacctcgtcgagctcatggattgaagcagaatac
gcggatgctggtggtggtgatcctgctattcctgatcactgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTATGTACACACCTGACCTCATG 14 177 513 Antisense
GAAGCTTTGCTATCGACATCGTGCT 106 343 591 Antisense
GACATCGTGCTCCATTCATGTTGAA 464 369 605 Antisense
GTCTGTGCTGCTTGTCATTTTCACA 622 471 696 Antisense
GGGCGCCATTAGGGTGGCAGACCGC 165 493 732 Antisense
CAAGTATTCCACGACGACTCGTTCG 129 185 777 Antisense
TCGACGCGACGAAAGTTCTCCGAGC 59 603 799 Antisense
GTTCTCCGAGCTGACGAATTCGTCG 108 443 813 Antisense
GCAGCGCGACAGCGTCAGTGTGGGT 417 313 870 Antisense
GAATACGCGGATGCTGGTGGTGGTG 113 327 927 Antisense
GATCCTGCTATTCCTGATCACTGAA 692 415 951 Antisense
Sequence Source Affymetrix Proprietary Database