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[190873_at]

Description B0252.4 /REP_DB=WormBase Gene ID /WP=CE02420 /CHR=2 /FEA=Sanger Annotation /DEF=locus:cyp-10 Cyclophilin (ST.LOUIS) SW:P52017 protein_id:AAC46758.1
Cluster 6grp_high1_10_10 > 77      4grp_highest_8_8 > 63      4grp_high_8_8 > 28      6grp_total > 78      4grp_total > 36      6grp_cgc > 49      6grp_high1_sub > Da      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 52
1 2 3 4 range
A 115.1
(-3)
P 		157.9
(3)
P 		134.4
(-0.3)
P 		138.8
(0.3)
P 		43
B 141.3
(3)
P 		128.9
(0.9)
P 		105.7
(-3)
P 		136.4
(2.2)
P 		36
C 133
(3)
P 		123.9
(0.5)
P 		118.6
(-0.9)
P 		111.1
(-3)
P 		22
avr 129.8
(0.5) 		136.9
(3) 		119.6
(-3) 		128.8
(0.2) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 357
1 2 3 4 5 6 range
A 166.7
(-1.2)
M 		120.9
(-3)
P 		162.2
(-1.4)
P 		190.7
(-0.3)
P 		241.4
(1.7)
P 		273.2
(3)
P 		152
B 159.4
(-3)
P 		196.7
(-2.3)
P 		227.5
(-1.7)
P 		164.5
(-2.9)
P 		261.5
(-1.1)
P 		474.3
(3)
P 		315
C 163.7
(-2.2)
P 		173.1
(-2)
P 		177
(-2)
P 		117.1
(-3)
P 		212.6
(-1.4)
P 		468
(3)
P 		351
avr 163.3
(-2.9) 		163.6
(-2.8) 		188.9
(-2.2) 		157.4
(-3) 		238.5
(-1) 		405.2
(3) 		248
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 41.9
(3)
P 		34.3
(0.9)
P 		35.1
(1.1)
P 		20.3
(-3)
P 		22
B 45.1
(3)
P 		31.8
(-0.9)
P 		24.5
(-3)
P 		29.1
(-1.7)
P 		21
C 44
(3)
P 		35.6
(1)
P 		41.3
(2.4)
P 		18.7
(-3)
P 		25
avr 43.7
(3) 		33.9
(0.2) 		33.6
(0.1) 		22.7
(-3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 153
1 2 3 4 5 6 range
A 30.7
(-3)
M 		43
(-1.2)
P 		35.3
(-2.3)
P 		48.4
(-0.5)
P 		72.8
(3)
P 		66.5
(2.1)
P 		42
B 55.5
(-2.5)
P 		65.5
(-2)
P 		55.2
(-2.5)
P 		43.6
(-3)
P 		106.2
(-0.2)
P 		176.9
(3)
P 		133
C 60.7
(-1.3)
P 		52.8
(-1.7)
P 		45
(-2)
P 		23.5
(-3)
P 		68.8
(-1)
P 		156.7
(3)
P 		133
avr 49
(-2.3) 		53.8
(-2) 		45.2
(-2.6) 		38.5
(-3) 		82.6
(-0.2) 		133.4
(3) 		95
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190873_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5705
Sequence Type Exemplar sequence
Representative Public ID B0252.4 NCBI
Target Description B0252.4 /REP_DB=WormBase Gene ID /WP=CE02420 /CHR=2 /FEA=Sanger Annotation /DEF=locus:cyp-10 Cyclophilin (ST.LOUIS) SW:P52017 protein_id:AAC46758.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026719(11), NM_063015(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026719 NCBI Caenorhabditis elegans B0252.4b (Cyclophilin) mRNA, complete cds. 11/11 None
NM_063015 NCBI Caenorhabditis elegans B0252.4a (Cyclophilin) mRNA, complete cds. 11/11 A 
SNAP00000013955 ENSEMBL cdna:SNAP chromosome:CEL140:II:6912603:6913291:-1 11/11 None
GENEFINDER00000013962 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:6912603:6913291:-1 11/11 None
B0252.4b ENSEMBL cdna:known chromosome:CEL140:II:6912570:6913291:-1 gene:B0252.4 11/11 A 
B0252.4a ENSEMBL cdna:known chromosome:CEL140:II:6912694:6913291:-1 gene:B0252.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6912689-6913287(-) 100.0 100.0
Public Domain and Genome References
Ensembl B0252.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68671 Cyclophylin protein 10, isoform b [Caenorhabditis elegans] ref|NP_001021890.1| B0252.4b [Caenorhabditis elegans] sp|P52017|CYP10_CAEEL Peptidyl-prolyl cis-trans isomerase 10 (PPIase) (Rotamase) (Cyclophilin-10) 1.0E-91
blast AAC46758 Cyclophylin protein 10, isoform a [Caenorhabditis elegans] ref|NP_495416.2| B0252.4a [Caenorhabditis elegans] gb|AAC47114.1| cyclophilin isoform 1.0E-83
blast AAK68671 Cyclophylin protein 10, isoform b [Caenorhabditis elegans] ref|NP_001021890.1| B0252.4b [Caenorhabditis elegans] sp|P52017|CYP10_CAEEL Peptidyl-prolyl cis-trans isomerase 10 (PPIase) (Rotamase) (Cyclophilin-10) 1.0E-83
blast AAC46758 Cyclophylin protein 10, isoform a [Caenorhabditis elegans] ref|NP_495416.2| B0252.4a [Caenorhabditis elegans] gb|AAC47114.1| cyclophilin isoform 2.0E-83
Protein Domains
Database ID Description E-Value
Pfam IPR002130 EMBL-EBI Peptidyl-prolyl cis-trans isomerase, cyclophilin type 1.1E-51
Pfam IPR002130 EMBL-EBI Peptidyl-prolyl cis-trans isomerase, cyclophilin type 4.4E-51
Sequence
Target Sequence 
>C. ELEGANS:190873_AT
ttcacaccacttccggagacattaaaattgagctttatgtagacgatgcgccaaaagctt
gcgagaattttcttgcattatgtgccagcgactactacaatggatgcatttttcatagaa
acatcaaagattttatggtgcaaactggagatccaacgcattcgggaaaaggcggcgaaa
gtatttggggaggaccattcgaagacgaatttgttagtgctctgaagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCACACCACTTCCGGAGACATTAA 696 685 26 Antisense
GAGCTTTATGTAGACGATGCGCCAA 518 387 55 Antisense
GACGATGCGCCAAAAGCTTGCGAGA 154 379 67 Antisense
GCGAGAATTTTCTTGCATTATGTGC 149 291 86 Antisense
GCATTATGTGCCAGCGACTACTACA 145 309 100 Antisense
AGCGACTACTACAATGGATGCATTT 45 81 112 Antisense
ATTTTATGGTGCAAACTGGAGATCC 281 15 155 Antisense
ACTGGAGATCCAACGCATTCGGGAA 371 95 169 Antisense
CAACGCATTCGGGAAAAGGCGGCGA 664 183 179 Antisense
ATTTGGGGAGGACCATTCGAAGACG 428 9 208 Antisense
GACGAATTTGTTAGTGCTCTGAAGC 354 379 229 Antisense
Sequence Source Affymetrix Proprietary Database