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[190871_at] Acyl CoA binding protein

Description Y17G7B.1 /REP_DB=WormBase Gene ID /WP=CE19034 /TR=Q9XXJ2 /GB=CAA19448.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=Acyl CoA binding protein
Cluster 6grp_total > 63      4grp_total > 24      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 229
1 2 3 4 range
A 69.6
(-3)
A 		101.9
(-1.8)
A 		150.3
(-0)
A 		231.5
(3)
A 		162
B 2.9
(-3)
A 		139.5
(1.3)
A 		118.8
(0.6)
A 		195.3
(3)
P 		192
C 39.8
(-3)
A 		92.2
(-1.1)
A 		120.8
(-0)
A 		203.5
(3)
P 		164
avr 37.4
(-3) 		111.2
(-0.4) 		130
(0.2) 		210.1
(3) 		173

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 166
1 2 3 4 5 6 range
A 74.7
(-3)
A 		98.2
(-2)
A 		217.2
(3)
A 		177.1
(1.3)
A 		125.4
(-0.9)
A 		102.9
(-1.8)
A 		143
B 97.3
(-3)
A 		165
(3)
A 		165.1
(3)
P 		133.1
(0.2)
A 		116
(-1.3)
M 		112.6
(-1.6)
P 		68
C 51.5
(-3)
A 		133.2
(3)
A 		110.9
(1.4)
A 		120.7
(2.1)
A 		62.5
(-2.2)
A 		127.3
(2.6)
P 		82
avr 74.5
(-3) 		132.1
(0.8) 		164.4
(3) 		143.6
(1.6) 		101.3
(-1.2) 		114.3
(-0.3) 		90
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 41
1 2 3 4 range
A 25.3
(-1.9)
A 		22.1
(-3)
A 		39.3
(3)
A 		33.9
(1.1)
A 		17
B 0.9
(-3)
A 		34.4
(1.9)
A 		27.5
(0.9)
A 		41.6
(3)
P 		41
C 13.2
(-3)
A 		26.5
(-0.2)
A 		42.1
(3)
A 		34.3
(1.4)
P 		29
avr 13.1
(-3) 		27.7
(0.7) 		36.3
(2.9) 		36.6
(3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 13.8
(-3)
A 		34.9
(0.8)
A 		47.3
(3)
A 		44.9
(2.6)
A 		37.8
(1.3)
A 		25
(-1)
A 		34
B 33.8
(-3)
A 		54.9
(3)
A 		40.1
(-1.2)
P 		35.3
(-2.6)
A 		47.1
(0.8)
M 		42
(-0.7)
P 		21
C 19.1
(-3)
A 		40.6
(2.5)
A 		28.2
(-0.7)
A 		24.3
(-1.7)
A 		20.2
(-2.7)
A 		42.6
(3)
P 		24
avr 22.2
(-3) 		43.5
(3) 		38.5
(1.6) 		34.8
(0.5) 		35
(0.6) 		36.5
(1) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190871_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3203
Sequence Type Exemplar sequence
Representative Public ID Y17G7B.1 NCBI
Target Description Y17G7B.1 /REP_DB=WormBase Gene ID /WP=CE19034 /TR=Q9XXJ2 /GB=CAA19448.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=Acyl CoA binding protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064151(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064151 NCBI Caenorhabditis elegans Y17G7B.1 (Y17G7B.1) mRNA, complete cds. 11/11 None
SNAP00000030314 ENSEMBL cdna:SNAP chromosome:CEL140:II:11972264:11972601:-1 9/11 None
GENEFINDER00000030391 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:11972264:11973569:-1 11/11 None
Y17G7B.1 ENSEMBL cdna:known chromosome:CEL140:II:11972264:11973569:-1 gene:Y17G7B.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:11972260-11973566(-) 100.0 100.0
Public Domain and Genome References
Gene Title Acyl CoA binding protein
Ensembl Y17G7B.1
Entrez Gene 189453 Entrez gene
SwissProt Q9XXJ2 EMBL-EBI
WormBase CE19034 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
62 acyl-CoA binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA19448 Hypothetical protein Y17G7B.1 [Caenorhabditis elegans] ref|NP_496552.1| Y17G7B.1 [Caenorhabditis elegans] 5.0E-63
blast CAA19448 Hypothetical protein Y17G7B.1 [Caenorhabditis elegans] ref|NP_496552.1| Y17G7B.1 [Caenorhabditis elegans] 2.0E-50
blast CAE73559 Hypothetical protein CBG21028 [Caenorhabditis briggsae] 3.0E-22
blast CAE73560 Hypothetical protein CBG21030 [Caenorhabditis briggsae] 6.0E-20
Protein Domains
Database ID Description E-Value
Pfam IPR000582 EMBL-EBI Acyl-coA-binding protein, ACBP 7.3E-9
Pfam IPR000582 EMBL-EBI Acyl-coA-binding protein, ACBP 7.1E-7
Pfam IPR000582 EMBL-EBI Acyl-coA-binding protein, ACBP 7.1E-7
Sequence
Target Sequence 
>C. ELEGANS:190871_AT
gctaacttttgaaattgccgccgaggagatgcgtcggctcaagtccgagccaaccgatcg
agagcggctgaaactctacgcattgtacaaacaggctctccatggggacattccaaatga
ggatgtgtatccagttcccgccggtgacgaggtcggcaggaaaaaatatgccgcctggaa
atcgcagaaaggcgcgaattcggagaaatgccgcgcggactacgtggcaatcgccgagga
aatgatcaaaaaatacgggcggaacattgtccgttgca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTAACTTTTGAAATTGCCGCCGAG 293 301 48 Antisense
AGATGCGTCGGCTCAAGTCCGAGCC 454 67 74 Antisense
TCCGAGCCAACCGATCGAGAGCGGC 98 595 91 Antisense
GAGCGGCTGAAACTCTACGCATTGT 680 385 109 Antisense
GTACAAACAGGCTCTCCATGGGGAC 327 459 132 Antisense
TGAGGATGTGTATCCAGTTCCCGCC 408 567 165 Antisense
CCCGCCGGTGACGAGGTCGGCAGGA 405 259 184 Antisense
AAATATGCCGCCTGGAAATCGCAGA 641 113 211 Antisense
CGGAGAAATGCCGCGCGGACTACGT 531 241 248 Antisense
CGGACTACGTGGCAATCGCCGAGGA 665 241 263 Antisense
TACGGGCGGAACATTGTCCGTTGCA 401 613 301 Antisense
Sequence Source Affymetrix Proprietary Database