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[190870_at] Initiation factor (IF-2)

Description C18H9.1 /REP_DB=WormBase Gene ID /WP=CE01801 /TR=Q09481 /GB=AAC46686.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=Initiation factor (IF-2)
Cluster 6grp_total > 26      4grp_total > 48      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 43
1 2 3 4 range
A 13.9
(-1.4)
A 		3.1
(-3)
A 		43.4
(2.8)
A 		44.5
(3)
A 		41
B 22.6
(2.6)
A 		24
(3)
A 		9.1
(-1.4)
A 		3.9
(-3)
A 		20
C 1.4
(-3)
A 		37.6
(3)
A 		32.2
(2.1)
A 		4.8
(-2.4)
A 		36
avr 12.6
(-3) 		21.6
(0.5) 		28.2
(3) 		17.7
(-1) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 25
(0.5)
A 		38.6
(3)
A 		9.5
(-2.3)
A 		24
(0.4)
A 		5.4
(-3)
A 		14.7
(-1.3)
A 		33
B 42.5
(3)
A 		19.6
(-2)
A 		30
(0.3)
P 		23.8
(-1.1)
A 		18.3
(-2.3)
A 		14.9
(-3)
A 		28
C 21.2
(-0.2)
A 		43.3
(3)
P 		1.5
(-3)
A 		5.4
(-2.4)
A 		24.6
(0.3)
M 		26.1
(0.5)
P 		42
avr 29.6
(1.7) 		33.8
(3) 		13.7
(-3) 		17.7
(-1.8) 		16.1
(-2.3) 		18.6
(-1.5) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 5
(-0.6)
A 		0.7
(-3)
A 		11.3
(3)
A 		6.5
(0.3)
A 		11
B 7.2
(3)
A 		5.9
(1.8)
A 		2.1
(-1.8)
A 		0.8
(-3)
A 		6
C 0.5
(-3)
A 		10.8
(2.8)
A 		11.2
(3)
A 		0.8
(-2.8)
A 		11
avr 4.2
(-1.4) 		5.8
(0.4) 		8.2
(3) 		2.7
(-3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 4.6
(-1.5)
A 		13.7
(3)
A 		2.1
(-2.8)
A 		6.1
(-0.8)
A 		1.6
(-3)
A 		3.6
(-2)
A 		12
B 14.8
(3)
A 		6.5
(-2.4)
A 		7.3
(-1.8)
P 		6.3
(-2.5)
A 		7.4
(-1.8)
A 		5.5
(-3)
A 		9
C 7.9
(0.5)
A 		13.2
(3)
P 		0.4
(-3)
A 		1.1
(-2.7)
A 		8
(0.6)
M 		8.7
(0.9)
P 		13
avr 9.1
(1.5) 		11.1
(3) 		3.3
(-3) 		4.5
(-2.1) 		5.7
(-1.2) 		5.9
(-1) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190870_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4535
Sequence Type Exemplar sequence
Representative Public ID C18H9.1 NCBI
Target Description C18H9.1 /REP_DB=WormBase Gene ID /WP=CE01801 /TR=Q09481 /GB=AAC46686.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=Initiation factor (IF-2)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062962(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062962 NCBI Caenorhabditis elegans C18H9.1 (C18H9.1) mRNA, complete cds. 11/11 None
SNAP00000038939 ENSEMBL cdna:SNAP chromosome:CEL140:II:6699441:6700425:1 11/11 None
GENEFINDER00000038943 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:6699441:6700425:1 11/11 None
C18H9.1 ENSEMBL cdna:known chromosome:CEL140:II:6699707:6700425:1 gene:C18H9.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6699703-6700422(+) 100.0 100.0
Public Domain and Genome References
Gene Title Initiation factor (IF-2)
Ensembl C18H9.1
Entrez Gene 182807 Entrez gene
SwissProt Q09481 EMBL-EBI
WormBase CE01801 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC46686 Hypothetical protein C18H9.1 [Caenorhabditis elegans] ref|NP_495363.1| C18H9.1 [Caenorhabditis elegans] 7.0E-90
blast AAC46686 Hypothetical protein C18H9.1 [Caenorhabditis elegans] ref|NP_495363.1| C18H9.1 [Caenorhabditis elegans] 1.0E-89
blast CAE66038 Hypothetical protein CBG11237 [Caenorhabditis briggsae] 2.0E-88
blast CAE66038 Hypothetical protein CBG11237 [Caenorhabditis briggsae] 1.0E-62
Sequence
Target Sequence 
>C. ELEGANS:190870_AT
gattatgtgaatcggcttgccaaaaacggtgttctacctgatgttatagataaagaacct
atacttccacgtgtcacacttccggaatctgaaataacatcacaatcgtatcgaaaatac
ccgaaaaaaccgaaagcaataggaaaagttggaagtaccggtggaaatagaaatggaatg
ggtgccatacatccaactctgatcagttatccagaagagcaaagaaagacaaatagtcgg
gttaaaaataataggagtaactatcatattggaaatattgggaacattggtggaaacatt
ggaaatggtcaaaaaatgaacaggaataaaaatggaggaagaaatcaaggaggaaatcat
ccggataatatgggaattccaatgttccccattgctagaccaacaccgtatgatcttgcc
gaatacattgaacgaggtttgaacactggaagatccaatcacagaactccacaaaatttc
cgaagat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTATGTGAATCGGCTTGCCAAAA 161 427 52 Antisense
AAAACGGTGTTCTACCTGATGTTAT 705 129 74 Antisense
CGTGTCACACTTCCGGAATCTGAAA 373 245 121 Antisense
GAATGGGTGCCATACATCCAACTCT 326 333 227 Antisense
CATCCAACTCTGATCAGTTATCCAG 216 211 241 Antisense
GAATTCCAATGTTCCCCATTGCTAG 363 323 425 Antisense
AGACCAACACCGTATGATCTTGCCG 80 71 448 Antisense
GATCTTGCCGAATACATTGAACGAG 624 417 463 Antisense
CGAGGTTTGAACACTGGAAGATCCA 198 245 484 Antisense
GAAGATCCAATCACAGAACTCCACA 625 337 500 Antisense
AGAACTCCACAAAATTTCCGAAGAT 187 73 514 Antisense
Sequence Source Affymetrix Proprietary Database