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[190866_at] Mouse MO25 protein like

Description Y53C12A.4 /REP_DB=WormBase Gene ID /WP=CE14890 /TR=O18211 /GB=CAB16486.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=Mouse MO25 protein like
Cluster 6grp_highest_10_10 > 81      6grp_high1_10_10 > 19      4grp_highest_8_8 > 33      4grp_high_8_8 > 50      6grp_highest_nonorm > 82      6grp_total > 29      4grp_total > 61      6grp_highest_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 269
1 2 3 4 range
A 471.6
(3)
P 		415.4
(1)
P 		379.8
(-0.2)
P 		301
(-3)
P 		171
B 526.5
(3)
P 		411.7
(0.4)
P 		428.4
(0.8)
P 		263
(-3)
P 		264
C 508.9
(3)
P 		407.9
(0.6)
P 		502.7
(2.9)
P 		257.3
(-3)
P 		252
avr 502.3
(3) 		411.7
(0.6) 		437
(1.3) 		273.8
(-3) 		229

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 190
1 2 3 4 5 6 range
A 365.4
(0.3)
P 		410.6
(3)
P 		311.9
(-3)
P 		357.8
(-0.2)
P 		374.8
(0.8)
P 		345.1
(-1)
P 		99
B 380.3
(1)
P 		367.2
(0.2)
P 		361.5
(-0.2)
P 		315.4
(-3)
P 		413.8
(3)
P 		368.3
(0.2)
P 		98
C 502.3
(3)
P 		356.6
(-2.8)
P 		350.5
(-3)
P 		370.1
(-2.2)
P 		368.4
(-2.3)
P 		362.4
(-2.5)
P 		152
avr 416
(3) 		378.1
(-0) 		341.3
(-3) 		347.8
(-2.5) 		385.7
(0.6) 		358.6
(-1.6) 		75
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 132
1 2 3 4 range
A 171.7
(3)
P 		90.2
(-0.8)
P 		99.3
(-0.4)
P 		44.1
(-3)
P 		128
B 167.9
(3)
P 		101.7
(-0.5)
P 		99.3
(-0.7)
P 		56
(-3)
P 		112
C 168.4
(2.7)
P 		117.3
(0.4)
P 		175.2
(3)
P 		43.4
(-3)
P 		132
avr 169.3
(3) 		103.1
(-0.3) 		124.6
(0.8) 		47.8
(-3) 		122

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 119
1 2 3 4 5 6 range
A 67.4
(-3)
P 		146
(3)
P 		67.9
(-3)
P 		90.7
(-1.2)
P 		113.1
(0.5)
P 		84
(-1.7)
P 		79
B 132.3
(0.5)
P 		122.2
(-0.3)
P 		87.8
(-2.7)
P 		83.5
(-3)
P 		168.1
(3)
P 		137.4
(0.8)
P 		85
C 186.2
(3)
P 		108.8
(-1.2)
P 		89.2
(-2.2)
P 		74.4
(-3)
P 		119.2
(-0.6)
P 		121.3
(-0.5)
P 		112
avr 128.6
(2.4) 		125.7
(2.1) 		81.6
(-3) 		82.9
(-2.8) 		133.5
(3) 		114.2
(0.8) 		52
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190866_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3799
Sequence Type Exemplar sequence
Representative Public ID Y53C12A.4 NCBI
Target Description Y53C12A.4 /REP_DB=WormBase Gene ID /WP=CE14890 /TR=O18211 /GB=CAB16486.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=Mouse MO25 protein like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063691(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063691 NCBI Caenorhabditis elegans Y53C12A.4 (Y53C12A.4) mRNA, complete cds. 11/11 None
SNAP00000043896 ENSEMBL cdna:SNAP chromosome:CEL140:II:9701869:9703610:-1 11/11 None
GENEFINDER00000043908 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:9701869:9704691:-1 11/11 None
Y53C12A.4.1 ENSEMBL cdna:known chromosome:CEL140:II:9701323:9703643:-1 gene:Y53C12A.4 11/11 None
Y53C12A.4.2 ENSEMBL cdna:known chromosome:CEL140:II:9701323:9703612:-1 gene:Y53C12A.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9701865-9703607(-) 100.0 100.0
Public Domain and Genome References
Gene Title Mouse MO25 protein like
Ensembl Y53C12A.4
Entrez Gene 174527 Entrez gene
SwissProt O18211 EMBL-EBI
WormBase CE14890 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:19170_AT Mo25 family protein at
ATH1-121501:245279_AT Mo25 family protein at
CANINE:1595898_AT similar to Calcium binding protein 39 (Mo25 protein) cfa
CANINE_2:CFA.18698.1.S1_AT similar to Calcium binding protein 39 (Mo25 protein) cfa
CANINE_2:CFAAFFX.16790.1.S1_AT similar to Calcium binding protein 39 (Mo25 protein) cfa
CANINE_2:CFAAFFX.16790.1.S1_S_AT similar to Calcium binding protein 39 (Mo25 protein) cfa
CHICKEN:GGA.5476.1.S1_AT similar to MO25 protein (CGI-66) gga
HG-U133_PLUS_2:224311_S_AT calcium binding protein 39 hs
HG-U133B:224311_S_AT calcium binding protein 39 hs
HU35KSUBA:RC_AA258576_AT calcium binding protein 39 hs
HU35KSUBA:H83753_AT calcium binding protein 39 hs
HU35KSUBC:RC_AA252676_AT calcium binding protein 39 hs
HG-U133A:217873_AT calcium binding protein 39 hs
HG-U133_PLUS_2:217873_AT calcium binding protein 39 hs
HG-FOCUS:217873_AT calcium binding protein 39 hs
HG-U133A_2:217873_AT calcium binding protein 39 hs
U133_X3P:G7706480_3P_AT calcium binding protein 39 hs
U133_X3P:G4929600_3P_A_AT calcium binding protein 39 hs
HG-U95B:46225_AT calcium binding protein 39 hs
HG-U95E:70597_AT Calcium binding protein 39 hs
HU35KSUBA:AA434013_AT Calcium binding protein 39 hs
MU11KSUBA:AA415604_AT calcium binding protein 39 mm
MU11KSUBA:AA415604_G_AT calcium binding protein 39 mm
MG-U74AV2:93976_AT calcium binding protein 39 mm
MOE430A:1418432_AT calcium binding protein 39 mm
MOUSE430A_2:1418432_AT calcium binding protein 39 mm
MOUSE430_2:1418432_AT calcium binding protein 39 mm
MOE430A:1418433_AT calcium binding protein 39 mm
MOUSE430A_2:1418433_AT calcium binding protein 39 mm
MOUSE430_2:1418433_AT calcium binding protein 39 mm
MU19KSUBA:TC22391_AT Calcium binding protein 39, mRNA (cDNA clone IMAGE:4952585) mm
MU19KSUBB:TC34239_AT Calcium binding protein 39, mRNA (cDNA clone IMAGE:4952585) mm
MU19KSUBC:TC38689_AT Calcium binding protein 39, mRNA (cDNA clone IMAGE:4952585) mm
MU19KSUBC:TC39514_AT Calcium binding protein 39, mRNA (cDNA clone IMAGE:4952585) mm
RG-U34B:RC_AA849965_AT calcium binding protein 39 (predicted) rn
RG-U34B:RC_AA851776_AT calcium binding protein 39 (predicted) rn
RG-U34B:RC_AA945088_AT calcium binding protein 39 (predicted) rn
RAE230A:1372244_AT calcium binding protein 39 (predicted) rn
RAT230_2:1372244_AT calcium binding protein 39 (predicted) rn
RAE230A:1372243_AT calcium binding protein 39 (predicted) rn
RAT230_2:1372243_AT calcium binding protein 39 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast CAB16486 Hypothetical protein Y53C12A.4 [Caenorhabditis elegans] ref|NP_496092.1| Y53C12A.4 [Caenorhabditis elegans] sp|O18211|MO25M_CAEEL Hypothetical MO25-like protein Y53C12A.4 in chromosome II 0.0
blast CAE57989 Hypothetical protein CBG01052 [Caenorhabditis briggsae] 0.0
blast CAB16486 Hypothetical protein Y53C12A.4 [Caenorhabditis elegans] ref|NP_496092.1| Y53C12A.4 [Caenorhabditis elegans] sp|O18211|MO25M_CAEEL Hypothetical MO25-like protein Y53C12A.4 in chromosome II 1.0E-173
blast CAE57989 Hypothetical protein CBG01052 [Caenorhabditis briggsae] 1.0E-167
Protein Domains
Database ID Description E-Value
Pfam IPR004892 EMBL-EBI Mo25 1.0E-126
Pfam IPR005636 EMBL-EBI DTW domain 1.3E-80
Pfam IPR004892 EMBL-EBI Mo25 1.6E-31
Pfam IPR004892 EMBL-EBI Mo25 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:190866_AT
agatattgccctgacatgcggttcgatgctccgtgaagctgtccgccatgagcatcttgc
tcgaattgttctctattctgaatatttccaacggttcttcgtttttgttcaatctgacgt
tttcgatatcgccactgatgcattttctacattcaaagatttgatgacaaaacataagaa
tatgtgtgcagagtatttggataataattacgatcgatttttcggccaatactcggcgct
cacaaactcagaaaactacgtgacccgacgccaatcgctgaaactgctcggcgagcttct
cctcgatcgacataatttcagcacaatgaacaaatatatcacaagtccagagaatctgaa
aacagtgatggaattgttgagagacaagagacggaatatccagtacgaggctttccacgt
ttttaagatcttcgtcgcgaatccaaacaagccacgtccaatcactgatattttgacaag
aaatcgtgataaactcgtagaatttctcactgcatttcaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGATATTGCCCTGACATGCGGTTCG 33 67 432 Antisense
TGACATGCGGTTCGATGCTCCGTGA 340 567 443 Antisense
AGCATCTTGCTCGAATTGTTCTCTA 174 79 482 Antisense
AATCTGACGTTTTCGATATCGCCAC 107 169 542 Antisense
ATATCGCCACTGATGCATTTTCTAC 362 21 557 Antisense
CTCGGCGCTCACAAACTCAGAAAAC 88 233 663 Antisense
CGAGCTTCTCCTCGATCGACATAAT 419 251 723 Antisense
TATCCAGTACGAGGCTTTCCACGTT 639 657 828 Antisense
TTCGTCGCGAATCCAAACAAGCCAC 18 697 862 Antisense
AAGCCACGTCCAATCACTGATATTT 372 149 880 Antisense
GTAGAATTTCTCACTGCATTTCACA 436 457 928 Antisense
Sequence Source Affymetrix Proprietary Database