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[190865_s_at] Acyl CoA binding protein

Description C18D11.2 /REP_DB=WormBase Gene ID /WP=CE18513 /TR=Q9XTZ5 /GB=CAB07319.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Acyl CoA binding protein
Cluster 6grp_highest_10_10 > 56      6grp_high1_10_10 > 64      4grp_high_8_8 > 13      6grp_highest_nonorm > 72      6grp_total > 65      4grp_total > 04      6grp_cgc > 46      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 667
1 2 3 4 range
A 320.2
(-1.5)
P 		193.9
(-3)
A 		196.1
(-3)
P 		695
(3)
P 		501
B 293.5
(-2.1)
P 		285.2
(-2.2)
P 		206.6
(-3)
P 		817.6
(3)
P 		611
C 352.5
(-0.8)
P 		151.1
(-3)
A 		276.2
(-1.6)
P 		692.1
(3)
P 		541
avr 322.1
(-1.7) 		210.1
(-3) 		226.3
(-2.8) 		734.9
(3) 		525

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 317
1 2 3 4 5 6 range
A 471.9
(1)
P 		313.8
(-2)
P 		546
(2.4)
P 		535.4
(2.2)
P 		261.9
(-3)
P 		579.1
(3)
P 		317
B 372
(-0.2)
P 		328.7
(-2.2)
P 		443.6
(3)
P 		310.1
(-3)
P 		316
(-2.7)
P 		434.6
(2.6)
P 		134
C 346.4
(-0.9)
P 		309.5
(-1.9)
P 		490.2
(3)
P 		409.8
(0.8)
P 		268.7
(-3)
P 		432.3
(1.4)
P 		222
avr 396.8
(0.3) 		317.3
(-2) 		493.3
(3) 		418.4
(0.9) 		282.2
(-3) 		482
(2.7) 		211
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 132
1 2 3 4 range
A 116.6
(3)
P 		42.1
(-3)
A 		51.3
(-2.3)
P 		101.7
(1.8)
P 		75
B 93.6
(-0.8)
P 		70.4
(-1.9)
P 		47.9
(-3)
P 		174.2
(3)
P 		126
C 116.7
(3)
P 		43.4
(-3)
A 		96.3
(1.3)
P 		116.7
(3)
P 		73
avr 109
(1.3) 		52
(-3) 		65.2
(-2) 		130.9
(3) 		79

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 83
1 2 3 4 5 6 range
A 87
(-2.2)
P 		111.6
(0.2)
P 		118.9
(0.9)
P 		135.8
(2.5)
P 		79
(-3)
P 		141
(3)
P 		62
B 129.4
(0.6)
P 		109.4
(-0.9)
P 		107.7
(-1.1)
P 		82.1
(-3)
P 		128.4
(0.5)
P 		162
(3)
P 		80
C 128.4
(1.4)
P 		94.4
(-1.8)
P 		124.8
(1.1)
P 		82.4
(-3)
P 		87
(-2.6)
P 		144.7
(3)
P 		62
avr 114.9
(-1) 		105.1
(-2.2) 		117.1
(-0.8) 		100.1
(-2.8) 		98.1
(-3) 		149.2
(3) 		51
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 190865_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7573
Sequence Type Exemplar sequence
Representative Public ID C18D11.2 NCBI
Target Description C18D11.2 /REP_DB=WormBase Gene ID /WP=CE18513 /TR=Q9XTZ5 /GB=CAB07319.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Acyl CoA binding protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067130(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067130 NCBI Caenorhabditis elegans Membrane Associated Acyl-CoA binding protein family member (maa-1) (maa-1) mRNA, complete cds. 11/11 None
SNAP00000031596 ENSEMBL cdna:SNAP chromosome:CEL140:III:11819661:11822344:-1 10/11 None
GENEFINDER00000031606 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:11819681:11822344:-1 11/11 None
C18D11.2 ENSEMBL cdna:known chromosome:CEL140:III:11819623:11822391:-1 gene:C18D11.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:11819676-11822340(-) 100.0 100.0
Public Domain and Genome References
Gene Title Acyl CoA binding protein
Gene Symbol maa-1
Ensembl C18D11.2
Entrez Gene 176612 Entrez gene
SwissProt Q9XTZ5 EMBL-EBI
WormBase CE18513 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
62 acyl-CoA binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB07319 Hypothetical protein C18D11.2 [Caenorhabditis elegans] ref|NP_499531.1| Membrane Associated Acyl-CoA binding protein family member (maa-1) [Caenorhabditis elegans] 1.0E-130
blast CAB07319 Hypothetical protein C18D11.2 [Caenorhabditis elegans] ref|NP_499531.1| Membrane Associated Acyl-CoA binding protein family member (maa-1) [Caenorhabditis elegans] 1.0E-114
blast CAE67722 Hypothetical protein CBG13297 [Caenorhabditis briggsae] 1.0E-102
blast CAE67722 Hypothetical protein CBG13297 [Caenorhabditis briggsae] 5.0E-89
blast AAK18960 Acyl-coenzyme a binding protein protein 4 [Caenorhabditis elegans] ref|NP_498609.1| Acyl-Coenzyme A Binding Protein family member (acbp-4) [Caenorhabditis elegans] 1.0E-20
Protein Domains
Database ID Description E-Value
Pfam IPR000582 EMBL-EBI Acyl-coA-binding protein, ACBP 4.8E-35
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_499531.1 1 228-250
C18D11.2 1 228-250
GENEFINDER00000031606 1 228-250
Sequence
Target Sequence 
>C. ELEGANS:190865_S_AT
gcatacgtggactcgattgttcagaagattcgagaagttcagaaggaatacaagacagag
gagtggatgaagggagacacctatgagctgttggctccgaagtttgaggttttgggggtt
ctggaggggaaggatcaagctgttgaacatccaaagaaaacggaaaacaaagaaacggaa
aacgaaactgacaacgtcgaaaccccgaactccagtgcatgcattctatcggataatgag
tacgcagacgcaattgacgatgagattcagtcaagatcatcatcgttcactgaaccacac
aactcctttaacagaaggatatcccgacagagttcgcttaaatcctcatgccataggctc
gaaaaagagctgaaagttatcacagagtcgattgataaacttggaaaggctgtggaggag
cggcacaatttactgattggactcatgaaaaaagcgacagtctacgttctggtgccacgt
gtcacttcttggaaaaccataatctttttcgtattctggccatttgtcacgaagtttcta
ctccgatgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCATACGTGGACTCGATTGTTCAGA 474 307 235 Antisense
GGGAGACACCTATGAGCTGTTGGCT 60 495 306 Antisense
CCCGAACTCCAGTGCATGCATTCTA 270 259 438 Antisense
TGAACCACACAACTCCTTTAACAGA 457 571 525 Antisense
AAGGATATCCCGACAGAGTTCGCTT 152 161 549 Antisense
GAGTTCGCTTAAATCCTCATGCCAT 672 397 564 Antisense
GGAGGAGCGGCACAATTTACTGATT 650 515 648 Antisense
AAAGCGACAGTCTACGTTCTGGTGC 290 125 685 Antisense
GTGCCACGTGTCACTTCTTGGAAAA 58 479 706 Antisense
TTTTCGTATTCTGGCCATTTGTCAC 450 677 740 Antisense
TGTCACGAAGTTTCTACTCCGATGG 598 557 759 Antisense
Sequence Source Affymetrix Proprietary Database