[Home] | [Total List]

[190864_at]

Description C29H12.3 /REP_DB=WormBase Gene ID /WP=CE02517 /TR=SW:Q18312 /GB=AAC46696.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=1R20 protein (Human)
Cluster 6grp_highest_10_10 > 71      6grp_high1_10_10 > 28      4grp_highest_8_8 > 53      4grp_high_8_8 > 09      6grp_highest_nonorm > 80      6grp_total > 17      4grp_total > 30      6grp_highest_sub > De      6grp_cgc > 12      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 321
1 2 3 4 range
A 406.7
(3)
P 		180.4
(-2)
P 		132.5
(-3)
P 		274.7
(0.1)
P 		274
B 440.3
(3)
P 		134
(-2.8)
P 		120.8
(-3)
P 		366.6
(1.6)
P 		320
C 393.2
(3)
P 		195.1
(-1.3)
P 		119.8
(-3)
P 		326.7
(1.5)
P 		273
avr 413.4
(3) 		169.8
(-2.1) 		124.4
(-3) 		322.7
(1.1) 		289

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 273
1 2 3 4 5 6 range
A 352.5
(3)
P 		283
(1.3)
P 		109.4
(-3)
P 		134.5
(-2.4)
P 		145
(-2.1)
P 		172.6
(-1.4)
P 		243
B 374.7
(3)
P 		205.9
(-0.7)
P 		133.2
(-2.3)
P 		101.9
(-3)
P 		168.1
(-1.5)
P 		165.1
(-1.6)
P 		273
C 319.4
(3)
P 		215.8
(-0.2)
P 		179.4
(-1.4)
P 		127.9
(-3)
P 		140
(-2.6)
P 		162
(-1.9)
P 		192
avr 348.9
(3) 		234.9
(-0) 		140.7
(-2.5) 		121.4
(-3) 		151
(-2.2) 		166.6
(-1.8) 		228
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 120
1 2 3 4 range
A 148.1
(3)
P 		39.2
(-2.8)
P 		34.6
(-3)
P 		40.2
(-2.7)
P 		114
B 140.4
(3)
P 		33.1
(-2.7)
P 		28
(-3)
P 		78.1
(-0.3)
P 		112
C 130.2
(3)
P 		56.1
(-2)
P 		41.8
(-3)
P 		55.1
(-2.1)
P 		88
avr 139.6
(3) 		42.8
(-2.5) 		34.8
(-3) 		57.8
(-1.7) 		105

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 107
1 2 3 4 5 6 range
A 65
(0.2)
P 		100.6
(3)
P 		23.8
(-3)
P 		34.1
(-2.2)
P 		43.8
(-1.4)
P 		42
(-1.6)
P 		77
B 130.4
(3)
P 		68.5
(-0.6)
P 		32.4
(-2.7)
P 		27
(-3)
P 		68.3
(-0.6)
P 		61.6
(-1)
P 		103
C 118.4
(3)
P 		65.8
(-0.4)
P 		45.7
(-1.7)
P 		25.7
(-3)
P 		45.3
(-1.7)
P 		54.2
(-1.2)
P 		93
avr 104.6
(3) 		78.3
(0.9) 		34
(-2.6) 		28.9
(-3) 		52.5
(-1.1) 		52.6
(-1.1) 		76
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190864_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4283
Sequence Type Exemplar sequence
Representative Public ID C29H12.3 NCBI
Target Description C29H12.3 /REP_DB=WormBase Gene ID /WP=CE02517 /TR=SW:Q18312 /GB=AAC46696.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=1R20 protein (Human)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062822(11), NM_182096(11), NM_001026828(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062822 NCBI Caenorhabditis elegans Regulator of G protein Signaling family member (rgs-3) (rgs-3) mRNA, complete cds. 11/11 None
NM_182096 NCBI Caenorhabditis elegans Regulator of G protein Signaling family member (rgs-3) (rgs-3) mRNA, complete cds. 11/11 None
NM_001026828 NCBI Caenorhabditis elegans Regulator of G protein Signaling family member (rgs-3) (rgs-3) mRNA, complete cds. 11/11 None
SNAP00000038438 ENSEMBL cdna:SNAP chromosome:CEL140:II:6108632:6109878:1 11/11 None
GENEFINDER00000038447 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:6108101:6109878:1 11/11 None
C29H12.3a ENSEMBL cdna:known chromosome:CEL140:II:6100015:6110036:1 gene:C29H12.3 11/11 None
C29H12.3b ENSEMBL cdna:known chromosome:CEL140:II:6103478:6109878:1 gene:C29H12.3 11/11 None
C29H12.3c ENSEMBL cdna:known chromosome:CEL140:II:6108653:6109878:1 gene:C29H12.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6108649-6109875(+) 100.0 100.0
Public Domain and Genome References
Ensembl C29H12.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAL02450 Regulator of g protein signaling protein 3, isoform a [Caenorhabditis elegans] ref|NP_495223.1| Regulator of G protein Signaling family member (rgs-3) [Caenorhabditis elegans] sp|Q18312|RGS3_CAEEL Regulator of G protein signaling rgs-3 1.0E-173
blast AAM98050 Regulator of g protein signaling protein 3, isoform b [Caenorhabditis elegans] ref|NP_871896.1| Regulator of G protein Signaling family member (rgs-3) [Caenorhabditis elegans] 1.0E-149
blast AAL02450 Regulator of g protein signaling protein 3, isoform a [Caenorhabditis elegans] ref|NP_495223.1| Regulator of G protein Signaling family member (rgs-3) [Caenorhabditis elegans] sp|Q18312|RGS3_CAEEL Regulator of G protein signaling rgs-3 1.0E-149
blast AAM98050 Regulator of g protein signaling protein 3, isoform b [Caenorhabditis elegans] ref|NP_871896.1| Regulator of G protein Signaling family member (rgs-3) [Caenorhabditis elegans] 1.0E-147
blast AAL02450 Regulator of g protein signaling protein 3, isoform a [Caenorhabditis elegans] ref|NP_495223.1| Regulator of G protein Signaling family member (rgs-3) [Caenorhabditis elegans] sp|Q18312|RGS3_CAEEL Regulator of G protein signaling rgs-3 1.0E-147
Protein Domains
Database ID Description E-Value
Pfam IPR000342 EMBL-EBI Regulator of G protein 6.8E-10
Pfam IPR000342 EMBL-EBI Regulator of G protein 5.6E-25
Pfam IPR000342 EMBL-EBI Regulator of G protein 6.8E-10
Pfam IPR000342 EMBL-EBI Regulator of G protein 5.6E-25
Pfam IPR000342 EMBL-EBI Regulator of G protein 6.8E-10
Pfam IPR000342 EMBL-EBI Regulator of G protein 5.6E-25
Pfam IPR000342 EMBL-EBI Regulator of G protein 6.8E-10
Pfam IPR000342 EMBL-EBI Regulator of G protein 5.6E-25
Pfam IPR000342 EMBL-EBI Regulator of G protein 6.8E-10
Pfam IPR000342 EMBL-EBI Regulator of G protein 5.6E-25
Sequence
Target Sequence 
>C. ELEGANS:190864_AT
aaggatccatcaacttgtcttcaagttcaatgaaatcattgagaaacgctgttgccagtg
agactctcgacatggaagagtttgctccagcaatcaaagaagtcagaagacttctcgaaa
acgatcaattcccacgcttccgtcgctctgagctttatctcgagtatttggaggagcttc
taccacgctcgtatgctgaaaagtgggcgcaaagcttcgaaggtctccttggcaaccacg
tgggtcgccatcacttccgcatattcttgcgctcaatccacgcggaggaaaaccttcgct
tttgggaagccgttgtagagttcagatcgagtcgccataaggccaacgcgatgaacaatc
taggaaaggttattctgagtacctacttggcagagggaactacaaacgaagtattccttc
cattcggtgttcgtcaggtcattgaacgccgtattcaggacaatcagatcgacattactc
tttttgatgaagccatcaagcatgtcgaacaggttcttcgaaatgatccgtatgttcgtt
tcctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGGATCCATCAACTTGTCTTCAAG 36 161 281 Antisense
GAAACGCTGTTGCCAGTGAGACTCT 67 359 323 Antisense
TCGAAAACGATCAATTCCCACGCTT 58 601 395 Antisense
GTCGCTCTGAGCTTTATCTCGAGTA 219 475 422 Antisense
CTTCTACCACGCTCGTATGCTGAAA 316 221 457 Antisense
CGCAAAGCTTCGAAGGTCTCCTTGG 447 253 488 Antisense
TCACTTCCGCATATTCTTGCGCTCA 430 627 531 Antisense
TGCGCTCAATCCACGCGGAGGAAAA 593 573 548 Antisense
GATCGAGTCGCCATAAGGCCAACGC 420 415 605 Antisense
TCGTCAGGTCATTGAACGCCGTATT 310 603 711 Antisense
AAATGATCCGTATGTTCGTTTCCTC 299 119 801 Antisense
Sequence Source Affymetrix Proprietary Database