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[190863_at] X box DNA binding protein-1

Description R74.3 /REP_DB=WormBase Gene ID /WP=CE01056 /TR=Q22027 /GB=CAA85273.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=X box DNA binding protein-1
Cluster 6grp_highest_10_10 > 72      6grp_high1_10_10 > 38      4grp_highest_8_8 > 23      4grp_high_8_8 > 06      6grp_highest_nonorm > 47      6grp_total > 37      4grp_total > 02      6grp_highest_sub > Cu      6grp_cgc > 15      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4047
1 2 3 4 range
A 3527.4
(-2.8)
P 		3510.4
(-2.9)
P 		3423.3
(-3)
P 		7205.4
(3)
P 		3782
B 3769.1
(-1.9)
P 		3158.2
(-3)
P 		3697.8
(-2.1)
P 		6575.2
(3)
P 		3417
C 3745.1
(-2.6)
P 		3902.4
(-2.3)
P 		3520.6
(-3)
P 		6890.8
(3)
P 		3370
avr 3680.5
(-2.7) 		3523.7
(-3) 		3547.2
(-3) 		6890.5
(3) 		3367

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1855
1 2 3 4 5 6 range
A 3460.7
(0.1)
P 		4247
(3)
P 		2624.6
(-3)
P 		3581.6
(0.5)
P 		2995.8
(-1.6)
P 		4189.9
(2.8)
P 		1622
B 3607.6
(3)
P 		3347.9
(-0.4)
P 		3155.2
(-3)
P 		3166.8
(-2.8)
P 		3243.6
(-1.8)
P 		3180.1
(-2.7)
P 		452
C 4479.3
(3)
P 		3092.5
(-3)
P 		3920.6
(0.6)
P 		3291.6
(-2.1)
P 		3333.9
(-2)
P 		3292.8
(-2.1)
P 		1387
avr 3849.2
(3) 		3562.5
(0.4) 		3233.5
(-2.6) 		3346.7
(-1.6) 		3191.1
(-3) 		3554.3
(0.3) 		658
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 639
1 2 3 4 range
A 1284.3
(3)
P 		762
(-3)
P 		894.9
(-1.5)
P 		1054.7
(0.4)
P 		522
B 1201.9
(1.1)
P 		780
(-3)
P 		856.9
(-2.3)
P 		1401.2
(3)
P 		621
C 1239.7
(3)
P 		1122
(-3)
P 		1227
(2.4)
P 		1161.9
(-1)
P 		118
avr 1242
(3) 		888
(-3) 		992.9
(-1.2) 		1205.9
(2.4) 		354

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1089
1 2 3 4 5 6 range
A 637.9
(-2.6)
P 		1510.4
(3)
P 		571.6
(-3)
P 		908.4
(-0.8)
P 		904
(-0.9)
P 		1020.1
(-0.1)
P 		939
B 1255.3
(2.3)
P 		1114.4
(0.8)
P 		766.2
(-3)
P 		838.8
(-2.2)
P 		1317.8
(3)
P 		1185.9
(1.6)
P 		552
C 1660.3
(3)
P 		943.6
(-1.3)
P 		997.9
(-1)
P 		661.9
(-3)
P 		1078.8
(-0.5)
P 		1102.3
(-0.4)
P 		998
avr 1184.5
(2.9) 		1189.5
(3) 		778.6
(-3) 		803
(-2.6) 		1100.2
(1.7) 		1102.8
(1.7) 		411
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190863_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7032
Sequence Type Exemplar sequence
Representative Public ID R74.3 NCBI
Target Description R74.3 /REP_DB=WormBase Gene ID /WP=CE01056 /TR=Q22027 /GB=CAA85273.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=X box DNA binding protein-1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027566(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027566 NCBI Caenorhabditis elegans X-box Binding Protein homolog family member (xbp-1) (xbp-1) mRNA, complete cds. 11/11 None
SNAP00000044749 ENSEMBL cdna:SNAP chromosome:CEL140:III:4194023:4195088:1 11/11 None
R74.3.1 ENSEMBL cdna:known chromosome:CEL140:III:4193848:4195319:1 gene:R74.3 11/11 A 
R74.3.2 ENSEMBL cdna:known chromosome:CEL140:III:4193854:4195292:1 gene:R74.3 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000044760 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4194022-4194921(+) 100.0 100.0
Public Domain and Genome References
Gene Title X box DNA binding protein-1
Gene Symbol xbp-1
Ensembl R74.3
Entrez Gene 175541 Entrez gene
SwissProt Q22027 EMBL-EBI
WormBase CE01056 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA85273 Hypothetical protein R74.3 [Caenorhabditis elegans] ref|NP_001022737.1| X-box Binding Protein homolog family member (xbp-1) [Caenorhabditis elegans] 1.0E-112
blast AAL60200 X-box binding protein unprocessed isoform [Caenorhabditis elegans] 1.0E-112
blast CAA85273 Hypothetical protein R74.3 [Caenorhabditis elegans] ref|NP_001022737.1| X-box Binding Protein homolog family member (xbp-1) [Caenorhabditis elegans] 1.0E-101
blast AAL60200 X-box binding protein unprocessed isoform [Caenorhabditis elegans] 1.0E-101
blast CAE72866 Hypothetical protein CBG20165 [Caenorhabditis briggsae] 8.0E-49
Sequence
Target Sequence 
>C. ELEGANS:190863_AT
gctccgcgctgaaaacgaacgtcttcgccgtcaaaataaaaatcttatgaaccagcagaa
cgagtccgtcatgtatatggaagagaacaacgaaaacttgatgaacagcaatgatgcatg
catctaccagaacgtcgtctacgaagaagaagtcgtcggtgaggttgcaccagttgtcgt
cgtcggaggagaggatcgccgtgcctttgaatcagcagcattcattaatgagcctcagca
gtgggaacaggcccgatccacctccatcaacaacaacatcagcaaccaactccgtcgtat
ggattccaagaagaacaacacaatcagtgtggatatgtatctaactatcatctcgattct
atgcaaccacatggatcgcaacaagaagatggacacctcgaacaaatcctcgaacatctc
aagagcccaagcggagagttcgatcgattcgttgctggctacattgaggaaggagcagac
ggttatgcagcgtcttgttcaagcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTCCGCGCTGAAAACGAACGTCTT 691 295 249 Antisense
GCATCTACCAGAACGTCGTCTACGA 137 307 368 Antisense
ACCAGTTGTCGTCGTCGGAGGAGAG 341 85 417 Antisense
TCGCCGTGCCTTTGAATCAGCAGCA 431 599 444 Antisense
AGCAGTGGGAACAGGCCCGATCCAC 322 75 485 Antisense
GCAACCAACTCCGTCGTATGGATTC 172 321 530 Antisense
GATGGACACCTCGAACAAATCCTCG 512 405 636 Antisense
AATCCTCGAACATCTCAAGAGCCCA 416 167 653 Antisense
GAGCCCAAGCGGAGAGTTCGATCGA 241 387 671 Antisense
GATCGATTCGTTGCTGGCTACATTG 614 417 690 Antisense
GGTTATGCAGCGTCTTGTTCAAGCG 230 507 729 Antisense
Sequence Source Affymetrix Proprietary Database