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[190860_at] WD domain, G-beta repeats

Description F23B2.4 /REP_DB=WormBase Gene ID /WP=CE20709 /TR=O45401 /GB=CAB05177.2 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=WD domain, G-beta repeats
Cluster 6grp_high1_10_10 > 24      4grp_high_8_8 > 28      6grp_total > 24      4grp_total > 30      6grp_high1_sub > 02      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 46
1 2 3 4 range
A 88.1
(3)
P 		75
(0.8)
P 		51.8
(-3)
P 		54.9
(-2.5)
M 		36
B 52.2
(-0.2)
P 		52.8
(-0)
A 		44.8
(-3)
A 		60.9
(3)
A 		16
C 70.5
(1.9)
P 		42.5
(-3)
A 		47.5
(-2.1)
P 		76.6
(3)
P 		34
avr 70.3
(3) 		56.8
(-0.6) 		48
(-3) 		64.1
(1.3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 59
1 2 3 4 5 6 range
A 54.9
(-0.2)
P 		35.3
(-3)
A 		77.5
(3)
P 		56.9
(0.1)
P 		51.4
(-0.7)
P 		47.7
(-1.2)
M 		42
B 92.7
(2.7)
P 		94.7
(3)
P 		50.9
(-3)
P 		62.6
(-1.4)
A 		58.8
(-1.9)
P 		53.1
(-2.7)
P 		44
C 65.8
(1.9)
P 		68.7
(2.5)
P 		70.9
(3)
P 		42.8
(-3)
A 		60.2
(0.7)
P 		47.3
(-2)
A 		28
avr 71.1
(3) 		66.2
(1.6) 		66.4
(1.7) 		54.1
(-1.7) 		56.8
(-1) 		49.4
(-3) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 32.1
(3)
P 		16.3
(-0.9)
P 		13.5
(-1.6)
P 		8
(-3)
M 		24
B 16.7
(3)
P 		13
(-0.5)
A 		10.4
(-3)
A 		13
(-0.5)
A 		6
C 23.3
(3)
P 		12.2
(-3)
A 		16.6
(-0.6)
P 		12.9
(-2.6)
P 		11
avr 24
(3) 		13.8
(-1.8) 		13.5
(-2) 		11.3
(-3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 10.1
(-3)
P 		12.5
(-0.9)
A 		16.9
(3)
P 		14.4
(0.8)
P 		15.5
(1.8)
P 		11.6
(-1.7)
M 		7
B 32.3
(3)
P 		31.5
(2.8)
P 		12.4
(-3)
P 		16.6
(-1.7)
A 		23.9
(0.5)
P 		19.8
(-0.8)
P 		20
C 24.4
(3)
P 		20.9
(1.7)
P 		18
(0.6)
P 		8.6
(-3)
A 		19.5
(1.1)
P 		15.8
(-0.3)
A 		16
avr 22.3
(3) 		21.6
(2.5) 		15.8
(-1.3) 		13.2
(-3) 		19.6
(1.2) 		15.7
(-1.4) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190860_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9493
Sequence Type Exemplar sequence
Representative Public ID F23B2.4 NCBI
Target Description F23B2.4 /REP_DB=WormBase Gene ID /WP=CE20709 /TR=O45401 /GB=CAB05177.2 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=WD domain, G-beta repeats
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069190(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069190 NCBI Caenorhabditis elegans F23B2.4 (F23B2.4) mRNA, complete cds. 11/11 None
GENEFINDER00000024652 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:9136964:9144436:-1 10/11 None
F23B2.4 ENSEMBL cdna:known chromosome:CEL140:IV:9136964:9144433:-1 gene:F23B2.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000024640 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9136969-9144439(-) 100.0 100.0
Public Domain and Genome References
Gene Title WD domain, G-beta repeats
Ensembl F23B2.4
Entrez Gene 184883 Entrez gene
SwissProt O45401 EMBL-EBI
WormBase CE20709 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.8235.1.S1_AT similar to WD repeat domain 10 cfa
CANINE_2:CFAAFFX.8235.1.S1_S_AT similar to WD repeat domain 10 cfa
DROSOPHILA_2:1627247_AT dm
DROSGENOME1:141642_AT dm
CHICKEN:GGA.14400.1.S1_AT WD repeat domain 10 gga
CHICKEN:GGA.7227.1.S1_S_AT WD repeat domain 10 gga
CHICKEN:GGAAFFX.5327.1.S1_AT WD repeat domain 10 gga
CHICKEN:GGAAFFX.5327.2.S1_S_AT WD repeat domain 10 gga
HG-U133_PLUS_2:220744_S_AT WD repeat domain 10 hs
HG-U133A:220744_S_AT WD repeat domain 10 hs
HG-U133A_2:220744_S_AT WD repeat domain 10 hs
HU35KSUBC:RC_AA458923_AT WD repeat domain 10 hs
U133_X3P:G8922747_3P_A_AT WD repeat domain 10 hs
U133_X3P:HS2.367793.1.S1_3P_X_AT WD repeat domain 10 hs
U133_X3P:1563794_3P_S_AT WD repeat domain 10 hs
HG-U133_PLUS_2:1563794_S_AT WD repeat domain 10 hs
HG-U95B:54102_AT WD repeat domain 10 hs
HG-U133_PLUS_2:216678_AT WD repeat domain 10 hs
HG-U133A_2:216678_AT WD repeat domain 10 hs
HG-U133A:216678_AT WD repeat domain 10 hs
HU35KSUBB:RC_H71829_AT WD repeat domain 10 hs
HG-U95B:53438_AT WD repeat domain 10 hs
MG-U74BV2:164033_AT WD repeat domain 10 mm
MOE430A:1427239_AT WD repeat domain 10 mm
MOUSE430A_2:1427239_AT WD repeat domain 10 mm
MOUSE430_2:1427239_AT WD repeat domain 10 mm
MOE430B:1441259_S_AT WD repeat domain 10 mm
MOUSE430_2:1441259_S_AT WD repeat domain 10 mm
MU19KSUBA:TC18720_AT MFLJ00025 protein mm
Protein Similarities
Method ID Description E-Value
blast CAB05177 Hypothetical protein F23B2.4 [Caenorhabditis elegans] ref|NP_501591.1| F23B2.4 [Caenorhabditis elegans] 0.0
blast CAE74120 Hypothetical protein CBG21783 [Caenorhabditis briggsae] 0.0
blast XP_858818 PREDICTED: similar to WD repeat domain 10 isoform 3 [Canis familiaris] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.77
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 5.4E-11
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.1
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.13
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.26
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.0075
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.77
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 5.4E-11
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.1
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.13
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.26
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.0075
Sequence
Target Sequence 
>C. ELEGANS:190860_AT
atttgctgatgctggatgtggtctaaacaatcctctactcggtggaatgtcgtgtattca
ttgtgaaactccatttatcatatcattcgtttcattcgatattcttcccctcatcgaatt
caaaattgaaaatgatatttcatttgatgaagcaaaagaactaattgaaagtgaaccacc
tctgtctgacgatgattataatccattgagaggtctcaaaaagggaatcaaagaaattat
cctaaatagagaatcattgtcaaaactggaacaaggacatgttataattcaaacatttcc
acctccattggctccgaaattcttatttaacgttatgccaagtataacaattgcacaatg
taaaggatgcaataaggttttcgatttggacgattttgaaatggcatgccttcgaaaagg
acattgtccgttttgtagaacatcatatgatcggaatgaagcatttttcgtcgacga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTTGCTGATGCTGGATGTGGTCTA 435 17 2619 Antisense
TGGTCTAAACAATCCTCTACTCGGT 572 551 2637 Antisense
CCTCTACTCGGTGGAATGTCGTGTA 687 265 2650 Antisense
AAACTCCATTTATCATATCATTCGT 454 127 2684 Antisense
TCGTTTCATTCGATATTCTTCCCCT 190 605 2705 Antisense
TTCTTCCCCTCATCGAATTCAAAAT 281 689 2720 Antisense
GAACCACCTCTGTCTGACGATGATT 618 345 2791 Antisense
GAAATTCTTATTTAACGTTATGCCA 673 361 2934 Antisense
GACGATTTTGAAATGGCATGCCTTC 315 379 3007 Antisense
GACATTGTCCGTTTTGTAGAACATC 466 371 3038 Antisense
GGAATGAAGCATTTTTCGTCGACGA 467 531 3071 Antisense
Sequence Source Affymetrix Proprietary Database