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[190858_s_at] glucose transport protein

Description M01F1.5 /REP_DB=WormBase Gene ID /WP=CE18064 /TR=Q21455 /GB=CAA86519.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=glucose transport protein
Cluster 6grp_highest_10_10 > 45      6grp_high1_10_10 > 53      4grp_highest_8_8 > 29      4grp_high_8_8 > 07      6grp_highest_nonorm > 66      6grp_total > 20      4grp_total > 0      6grp_high1_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1317
1 2 3 4 range
A 1743.4
(1.3)
P 		802.4
(-3)
P 		1564.2
(0.5)
P 		2119.2
(3)
P 		1317
B 1230.5
(-3)
P 		1278.5
(-2.6)
P 		1572.9
(-0.1)
P 		1944.9
(3)
P 		714
C 1507.9
(-0.3)
P 		1293.1
(-3)
P 		1508
(-0.3)
P 		1764.5
(3)
P 		471
avr 1493.9
(-0.3) 		1124.7
(-3) 		1548.4
(0.1) 		1942.9
(3) 		818

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 811
1 2 3 4 5 6 range
A 1223.5
(-3)
P 		1627.5
(1.5)
P 		1758.1
(3)
P 		1507.3
(0.2)
P 		1588.1
(1.1)
P 		1715.3
(2.5)
P 		535
B 1611.9
(-1.4)
P 		1901.6
(3)
P 		1798.4
(1.4)
P 		1561.6
(-2.2)
P 		1506.2
(-3)
P 		1587
(-1.8)
P 		395
C 1150.6
(-2.5)
P 		1677.2
(1.5)
P 		1879.8
(3)
P 		1805.8
(2.4)
P 		1091
(-3)
P 		1423.7
(-0.5)
P 		789
avr 1328.7
(-3) 		1735.4
(2) 		1812.1
(3) 		1624.9
(0.7) 		1395.1
(-2.2) 		1575.3
(0.1) 		483
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 461
1 2 3 4 range
A 634.8
(3)
P 		174.2
(-3)
P 		408.9
(0.1)
P 		310.2
(-1.2)
P 		461
B 392.4
(1.7)
P 		315.8
(-3)
P 		364.5
(-0)
P 		414.5
(3)
P 		99
C 499.2
(2.3)
P 		371.8
(-1)
P 		525.6
(3)
P 		297.5
(-3)
P 		228
avr 508.8
(3) 		287.3
(-3) 		433
(0.9) 		340.7
(-1.6) 		222

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 408
1 2 3 4 5 6 range
A 225.5
(-3)
P 		578.8
(3)
P 		382.9
(-0.3)
P 		382.3
(-0.3)
P 		479.2
(1.3)
P 		417.6
(0.3)
P 		353
B 560.9
(1)
P 		633
(3)
P 		436.7
(-2.4)
P 		413.6
(-3)
P 		612
(2.4)
P 		591.8
(1.9)
P 		219
C 426.5
(-0.2)
P 		511.8
(3)
P 		478.4
(1.7)
P 		363.1
(-2.6)
P 		353
(-3)
P 		476.6
(1.7)
P 		159
avr 404.3
(-2.4) 		574.5
(3) 		432.7
(-1.5) 		386.3
(-3) 		481.4
(0) 		495.3
(0.5) 		188
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 190858_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7668
Sequence Type Exemplar sequence
Representative Public ID M01F1.5 NCBI
Target Description M01F1.5 /REP_DB=WormBase Gene ID /WP=CE18064 /TR=Q21455 /GB=CAA86519.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=glucose transport protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065324(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065324 NCBI Caenorhabditis elegans M01F1.5 (M01F1.5) mRNA, complete cds. 11/11 None
SNAP00000008229 ENSEMBL cdna:SNAP chromosome:CEL140:III:3511040:3516600:-1 11/11 None
GENEFINDER00000008234 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:3511040:3515886:-1 11/11 None
M01F1.5.1 ENSEMBL cdna:known chromosome:CEL140:III:3510957:3519590:-1 gene:M01F1.5 11/11 None
M01F1.5.2 ENSEMBL cdna:known chromosome:CEL140:III:3511040:3516745:-1 gene:M01F1.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:3511039-3515757(-) 99.11 99.11
Public Domain and Genome References
Gene Title glucose transport protein
Ensembl M01F1.5
Entrez Gene 175458 Entrez gene
SwissProt Q21455 EMBL-EBI
WormBase CE33672 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:14060_AT sugar transporter family protein at
ATH1-121501:260543_AT sugar transporter family protein at
CANINE_2:CFAAFFX.15664.1.S1_S_AT similar to solute carrier family 2 (facilitated glucose transporter), member 13 cfa
HG-U133_PLUS_2:234268_AT solute carrier family 2 (facilitated glucose transporter), member 13 hs
HG-U133B:234268_AT solute carrier family 2 (facilitated glucose transporter), member 13 hs
U133_X3P:HS2.117979.1.S1_3P_S_AT solute carrier family 2 (facilitated glucose transporter), member 13 hs
U133_X3P:HS.306388.0.S1_3P_X_AT solute carrier family 2 (facilitated glucose transporter), member 13 hs
U133_X3P:HS.306388.0.S1_3P_AT solute carrier family 2 (facilitated glucose transporter), member 13 hs
U133_X3P:234268_3P_AT solute carrier family 2 (facilitated glucose transporter), member 13 hs
HG-U133_PLUS_2:1552694_AT solute carrier family 2 (facilitated glucose transporter), member 13 hs
HG-U133_PLUS_2:1552695_A_AT solute carrier family 2 (facilitated glucose transporter), member 13 hs
HG-U95D:75998_AT solute carrier family 2 (facilitated glucose transporter), member 13 hs
HG-U133_PLUS_2:234561_AT solute carrier family 2 (facilitated glucose transporter), member 13 hs
HG-U133B:234561_AT solute carrier family 2 (facilitated glucose transporter), member 13 hs
HU35KSUBB:RC_R46079_F_AT Solute carrier family 2 (facilitated glucose transporter), member 13 hs
HG-U133_PLUS_2:227176_AT Solute carrier family 2 (facilitated glucose transporter), member 13 hs
HG-U133B:227176_AT Solute carrier family 2 (facilitated glucose transporter), member 13 hs
HU35KSUBB:RC_R46079_R_AT Solute carrier family 2 (facilitated glucose transporter), member 13 hs
HU35KSUBC:RC_Z39218_F_AT Solute carrier family 2 (facilitated glucose transporter), member 13 hs
U133_X3P:HS.90431.0.A1_3P_AT Solute carrier family 2 (facilitated glucose transporter), member 13 hs
HG-U95B:47159_AT Solute carrier family 2 (facilitated glucose transporter), member 13 hs
HG-U95B:42459_AT Solute carrier family 2 (facilitated glucose transporter), member 13 hs
HG-U95C:51452_AT Solute carrier family 2 (facilitated glucose transporter), member 13 hs
HG-U95E:68452_F_AT Solute carrier family 2 (facilitated glucose transporter), member 13 hs
HG-U95E:68454_R_AT Solute carrier family 2 (facilitated glucose transporter), member 13 hs
HG-U95D:87650_AT Solute carrier family 2 (facilitated glucose transporter), member 13 hs
HU35KSUBD:RC_AA620293_AT Solute carrier family 2 (facilitated glucose transporter), member 13 hs
RG-U34B:RC_AI070311_AT solute carrier family 2 (facilitated glucose transporter), member 13 rn
RAE230A:1369680_AT solute carrier family 2 (facilitated glucose transporter), member 13 rn
RAT230_2:1369680_AT solute carrier family 2 (facilitated glucose transporter), member 13 rn
YEAST_2:1773783_AT Myo-inositol transporter with strong similarity to the minor myo-inositol transporter Itr2p, member of the sugar transporter superfamily; expression is repressed by inositol and choline via Opi1p and derepressed via Ino2p and Ino4p Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
6810 transport inferred from electronic annotation QuickGO AmiGO
8643 carbohydrate transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5215 transporter activity inferred from electronic annotation QuickGO AmiGO
5351 sugar porter activity inferred from electronic annotation QuickGO AmiGO
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA86519 Hypothetical protein M01F1.5 [Caenorhabditis elegans] ref|NP_497725.2| M01F1.5 [Caenorhabditis elegans] 0.0
blast CAE64945 Hypothetical protein CBG09776 [Caenorhabditis briggsae] 0.0
blast CAA16400 Hypothetical protein Y51A2D.4 [Caenorhabditis elegans] ref|NP_507623.1| Y51A2D.4 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR005828 EMBL-EBI General substrate transporter 7.8E-100
Pfam IPR005828 EMBL-EBI General substrate transporter 7.7E-27
Pfam IPR005828 EMBL-EBI General substrate transporter 2.3E-43
Pfam IPR005828 EMBL-EBI General substrate transporter 6.2E-46
Pfam IPR005828 EMBL-EBI General substrate transporter 7.7E-27
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_497725.2 11 26-48,100-119,124-146,161-183,190-212,292-314,321-340,350-372,469-491,506-528,535-557
M01F1.5.1 11 26-48,100-119,124-146,161-183,190-212,292-314,321-340,350-372,469-491,506-528,535-557
M01F1.5.2 11 26-48,100-119,124-146,161-183,190-212,292-314,321-340,350-372,469-491,506-528,535-557
SNAP00000008229 11 26-48,100-119,124-146,161-183,190-212,292-314,321-340,350-372,469-491,506-528,535-557
GENEFINDER00000008234 11 48-70,90-112,124-143,147-169,181-203,247-269,378-400,410-432,527-549,564-586,593-615
Sequence
Target Sequence 
>C. ELEGANS:190858_S_AT
aaaggatactgtctaccattcccatcggatgactctagtgactactctgccactggaatt
tgtgaattctcgaatttgacaaacaatggaacagatttcgagtgggaagacacctattgt
cacactaaattcacagtattgccaattattattatggtcttttaccttttatcattctct
gcaggttacgccccgctaccatgggttctaaacgccgaattttatccattatgggcgaga
agtacagccgtatcggtatcaactgcatgcaattggatatttaatttaatagtctcactg
acattcctgtcactttcccaggcagcaacaaaatatggaacattcttcatttattgtgga
tgcaccatggttgctcttgtat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAGGATACTGTCTACCATTCCCAT 567 119 1387 Antisense
CTACCATTCCCATCGGATGACTCTA 688 225 1399 Antisense
GGATGACTCTAGTGACTACTCTGCC 516 511 1413 Antisense
GACTACTCTGCCACTGGAATTTGTG 365 373 1426 Antisense
TGGTCTTTTACCTTTTATCATTCTC 229 553 1541 Antisense
TTATCATTCTCTGCAGGTTACGCCC 172 681 1555 Antisense
GCTACCATGGGTTCTAAACGCCGAA 687 297 1581 Antisense
AACGCCGAATTTTATCCATTATGGG 383 145 1597 Antisense
GCCGTATCGGTATCAACTGCATGCA 519 283 1633 Antisense
TAGTCTCACTGACATTCCTGTCACT 66 655 1676 Antisense
GGATGCACCATGGTTGCTCTTGTAT 180 513 1744 Antisense
Sequence Source Affymetrix Proprietary Database