[Home] | [Total List]

[190857_at] acetoacetyl CoA thiolase

Description T02G5.7 /REP_DB=WormBase Gene ID /WP=CE04859 /TR=Q22101 /GB=AAA82398.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=acetoacetyl CoA thiolase
Cluster 6grp_highest_10_10 > 27      6grp_high1_10_10 > 62      4grp_highest_8_8 > 26      4grp_high_8_8 > 59      6grp_highest_nonorm > 28      6grp_total > 62      4grp_total > 60      6grp_highest_sub > 03_04      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2311
1 2 3 4 range
A 3482.6
(-0.7)
P 		3388.1
(-1.1)
P 		4624
(3)
P 		2794.1
(-3)
P 		1830
B 3802.6
(1.2)
P 		3139.6
(-0.7)
P 		4463.1
(3)
P 		2313
(-3)
P 		2150
C 3531
(1)
P 		3108.9
(-0.6)
P 		4017.6
(3)
P 		2523.4
(-3)
P 		1494
avr 3605.4
(0.5) 		3212.2
(-0.8) 		4368.2
(3) 		2543.5
(-3) 		1825

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12080
1 2 3 4 5 6 range
A 6044.4
(-3)
P 		10010.5
(-0.7)
P 		16528.3
(3)
P 		14600.2
(1.9)
P 		9452.2
(-1)
P 		7838.6
(-2)
P 		10484
B 5471.1
(-3)
P 		10662.4
(0.5)
P 		14413
(3)
P 		12557.2
(1.8)
P 		9744.9
(-0.1)
P 		7355.7
(-1.7)
P 		8942
C 4448.2
(-3)
P 		11300.6
(0.5)
P 		15428.1
(2.6)
P 		16202.3
(3)
P 		8927.2
(-0.7)
P 		8819.8
(-0.8)
P 		11754
avr 5321.2
(-3) 		10657.8
(0.2) 		15456.5
(3) 		14453.2
(2.4) 		9374.8
(-0.6) 		8004.7
(-1.4) 		10135
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 991
1 2 3 4 range
A 1268
(3)
P 		735.5
(-0.7)
P 		1208.8
(2.6)
P 		409
(-3)
P 		859
B 1212.6
(3)
P 		775.4
(-0.6)
P 		1034.2
(1.5)
P 		492.9
(-3)
P 		720
C 1168.9
(1.6)
P 		893.8
(-0.1)
P 		1400.3
(3)
P 		425.5
(-3)
P 		975
avr 1216.5
(3) 		801.6
(-0.2) 		1214.4
(3) 		442.5
(-3) 		774

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2845
1 2 3 4 5 6 range
A 1114.2
(-3)
P 		3560.2
(2.7)
P 		3599.5
(2.8)
P 		3703
(3)
P 		2852.3
(1)
P 		1908.5
(-1.2)
P 		2589
B 1903.7
(-3)
P 		3549.1
(1.8)
P 		3499.9
(1.7)
P 		3326
(1.2)
P 		3959.2
(3)
P 		2742.9
(-0.6)
P 		2056
C 1648.7
(-3)
P 		3448.2
(1.7)
P 		3926.7
(3)
P 		3258.3
(1.2)
P 		2888.7
(0.3)
P 		2952.5
(0.4)
P 		2278
avr 1555.5
(-3) 		3519.2
(2.6) 		3675.4
(3) 		3429.1
(2.3) 		3233.4
(1.7) 		2534.6
(-0.2) 		2120
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190857_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5518
Sequence Type Exemplar sequence
Representative Public ID T02G5.7 NCBI
Target Description T02G5.7 /REP_DB=WormBase Gene ID /WP=CE04859 /TR=Q22101 /GB=AAA82398.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=acetoacetyl CoA thiolase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063055(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063055 NCBI Caenorhabditis elegans T02G5.7 (T02G5.7) mRNA, complete cds. 11/11 None
SNAP00000014284 ENSEMBL cdna:SNAP chromosome:CEL140:II:7075557:7076994:1 11/11 None
GENEFINDER00000014297 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:7075557:7076994:1 11/11 None
T02G5.7 ENSEMBL cdna:known chromosome:CEL140:II:7075544:7077121:1 gene:T02G5.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7075552-7076990(+) 100.0 100.0
Public Domain and Genome References
Gene Title acetoacetyl CoA thiolase
Ensembl T02G5.7
Entrez Gene 3565206 Entrez gene
SwissProt Q22101 EMBL-EBI
WormBase CE04859 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_495456 T02G5.7 [Caenorhabditis elegans] gb|AAA82398.1| Hypothetical protein T02G5.7 [Caenorhabditis elegans] 0.0
blast CAE56899 Hypothetical protein CBG24740 [Caenorhabditis briggsae] 0.0
blast NP_495455 3-Ketoacyl-coA Thiolase family member (kat-1) [Caenorhabditis elegans] gb|AAA82397.2| 3-ketoacyl-coa thiolase protein 1 [Caenorhabditis elegans] 1.0E-106
Protein Domains
Database ID Description E-Value
Pfam IPR002155 EMBL-EBI Thiolase 1.6E-50
Pfam IPR002155 EMBL-EBI Thiolase 1.3E-100
Sequence
Target Sequence 
>C. ELEGANS:190857_AT
tgaaaccagtcttcgttcgtgacggcactggaaccatcacaccggccaatgcatcttcgc
ttaatgatggagctgtcgcaactgtcgttgtcggagagaatgctcttccacaaggagctc
atccacttgctgaactcgtggcatttgctgaagctggaagagctcccattgatttcaccg
tggcaccagtggacgccgttcgtcttcttctcaaaaaaagcgggctccaagtttcagaca
ttgcattgtgggagctcaacgaagcatttgccgtcactgttcttgctttcatcaaagaac
ttaatattgagccaagtgttgttaatgtaaaaggaggtgcagtagcgattgggcatccac
ttggaatgtctggtctccgaatcgtcaactcccttgcatattctttagctccaggacagc
tcggtgtagct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAAACCAGTCTTCGTTCGTGACGG 399 571 701 Antisense
GGCCAATGCATCTTCGCTTAATGAT 29 545 744 Antisense
TGATGGAGCTGTCGCAACTGTCGTT 579 565 765 Antisense
CACAAGGAGCTCATCCACTTGCTGA 96 195 809 Antisense
TGGAAGAGCTCCCATTGATTTCACC 326 547 855 Antisense
TGATTTCACCGTGGCACCAGTGGAC 187 563 870 Antisense
ACGAAGCATTTGCCGTCACTGTTCT 422 91 959 Antisense
GTGCAGTAGCGATTGGGCATCCACT 611 479 1037 Antisense
ATGTCTGGTCTCCGAATCGTCAACT 200 49 1066 Antisense
AACTCCCTTGCATATTCTTTAGCTC 525 141 1087 Antisense
AGCTCCAGGACAGCTCGGTGTAGCT 632 79 1107 Antisense
Sequence Source Affymetrix Proprietary Database