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[190856_s_at]

Description R107.4 /REP_DB=WormBase Gene ID /WP=CE03579 /TR=SW:P32742 /GB=CAA78473.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=tyrosine-protein kinase
Cluster 6grp_highest_10_10 > 96      6grp_high1_10_10 > 79      4grp_high_8_8 > 08      6grp_highest_nonorm > 82      6grp_total > 79      4grp_total > 31      6grp_highest_sub > Cu      6grp_high1_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 288
1 2 3 4 range
A 592.2
(3)
P 		378.2
(-3)
P 		413.1
(-2)
A 		476.9
(-0.2)
P 		214
B 665.9
(3)
P 		397.7
(-2.9)
P 		393.4
(-3)
P 		538.1
(0.2)
P 		273
C 517
(3)
P 		391.6
(-3)
P 		478.6
(1.2)
P 		497.8
(2.1)
P 		125
avr 591.7
(3) 		389.2
(-3) 		428.4
(-1.8) 		504.3
(0.4) 		203

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 286
1 2 3 4 5 6 range
A 291.4
(-3)
P 		375.2
(-1.2)
P 		296.4
(-2.9)
P 		347.1
(-1.8)
P 		358
(-1.6)
P 		577.1
(3)
P 		286
B 308.3
(-3)
P 		372.1
(-0.5)
P 		349.3
(-1.4)
P 		319.7
(-2.6)
P 		449
(2.5)
P 		460.6
(3)
P 		152
C 538.1
(3)
P 		396.1
(-0.6)
P 		439.8
(0.5)
P 		302.9
(-3)
P 		479.7
(1.5)
P 		505.9
(2.2)
P 		235
avr 379.3
(-1.2) 		381.1
(-1.2) 		361.8
(-1.8) 		323.2
(-3) 		428.9
(0.3) 		514.5
(3) 		191
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 146
1 2 3 4 range
A 215.6
(3)
P 		82.1
(-2.5)
P 		108
(-1.4)
A 		69.8
(-3)
P 		146
B 212.4
(3)
P 		98.2
(-2.7)
P 		91.2
(-3)
P 		114.7
(-1.8)
P 		121
C 171.1
(3)
P 		112.6
(-1)
P 		166.8
(2.7)
P 		83.9
(-3)
P 		87
avr 199.7
(3) 		97.6
(-2.6) 		122
(-1.2) 		89.5
(-3) 		110

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 146
1 2 3 4 5 6 range
A 53.7
(-3)
P 		133.5
(2.5)
P 		64.5
(-2.3)
P 		88
(-0.6)
P 		108
(0.8)
P 		140.5
(3)
P 		87
B 107.3
(-1.6)
P 		123.9
(-0.6)
P 		84.8
(-3)
P 		84.7
(-3)
P 		182.4
(3)
P 		171.7
(2.3)
P 		98
C 199.4
(3)
P 		120.9
(-0.4)
P 		111.9
(-0.8)
P 		60.9
(-3)
P 		155.2
(1.1)
P 		169.4
(1.7)
P 		139
avr 120.1
(0.1) 		126.1
(0.5) 		87.1
(-2.3) 		77.9
(-3) 		148.5
(2.1) 		160.5
(3) 		83
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 190856_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7475
Sequence Type Exemplar sequence
Representative Public ID R107.4 NCBI
Target Description R107.4 /REP_DB=WormBase Gene ID /WP=CE03579 /TR=SW:P32742 /GB=CAA78473.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=tyrosine-protein kinase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066601(11), NM_181899(11), NM_001027537(11), NM_181898(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066601 NCBI Caenorhabditis elegans R107.4a (R107.4) mRNA, complete cds. 11/11 None
NM_181899 NCBI Caenorhabditis elegans R107.4c (R107.4) mRNA, complete cds. 11/11 None
NM_001027537 NCBI Caenorhabditis elegans R107.4d (R107.4) mRNA, complete cds. 11/11 None
NM_181898 NCBI Caenorhabditis elegans R107.4b (R107.4) mRNA, complete cds. 11/11 None
GENEFINDER00000003030 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:9043859:9050597:-1 11/11 None
R107.4a ENSEMBL cdna:known chromosome:CEL140:III:9045960:9050597:-1 gene:R107.4 11/11 None
R107.4c ENSEMBL cdna:known chromosome:CEL140:III:9045967:9050597:-1 gene:R107.4 11/11 None
R107.4d ENSEMBL cdna:known chromosome:CEL140:III:9045979:9050598:-1 gene:R107.4 11/11 None
R107.4b ENSEMBL cdna:known chromosome:CEL140:III:9046260:9050597:-1 gene:R107.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000003024 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9046255-9050701(-) 99.0 100.0
Public Domain and Genome References
Ensembl R107.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA78473 Hypothetical protein R107.4a [Caenorhabditis elegans] ref|NP_499002.2| R107.4a [Caenorhabditis elegans] 0.0
blast CAI46627 Hypothetical protein R107.4d [Caenorhabditis elegans] ref|NP_001022708.1| R107.4d [Caenorhabditis elegans] 0.0
blast CAD45600 Hypothetical protein R107.4c [Caenorhabditis elegans] ref|NP_871628.1| R107.4c [Caenorhabditis elegans] 0.0
blast CAD45599 Hypothetical protein R107.4b [Caenorhabditis elegans] ref|NP_871627.1| R107.4b [Caenorhabditis elegans] sp|P32742|YNH4_CAEEL Putative serine/threonine-protein kinase R107.4 0.0
blast C88546 protein R107.4 [imported] - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 2.7E-24
Pfam IPR000719 EMBL-EBI Protein kinase 9.3E-4
Pfam IPR000631 EMBL-EBI Protein of unknown function UPF0031 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:190856_S_AT
atgaatttggcagcatcgctcagccaactacgttcgaattatcgaaaacttcaagatatg
atatccgaatgtgtagatctactcgagaagccattccaagaaatgaaagatactgtaaat
cgttatctacaagcccaaggatgttctcggaatacgatgcaaaagtctatgcatttgtta
agacccgaattccacgagagtcaaattcgcataaagaagaccaccaaatcgtgtaggaaa
ctcatcgaccaactaaacatagaattggatcaactcggatttgttcgcttaggagatata
ttgatcaaagccgaatcggagcagacacttacaagatcagaagagattcaagagacgcag
gttgtaagtatgaaaatggaattcaatagacttataatttttcaaagtattcaccatttt
tgttcaaaaacatcttgtataaatctatgtttttgtagagagtcatcaattgatgaaggc
tcaacttcattcgaatcaacaccaccatcgtcccctcctgacgttgggtctaacaact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGAATTTGGCAGCATCGCTCAGCC 647 43 2002 Antisense
ATCGCTCAGCCAACTACGTTCGAAT 489 35 2016 Antisense
CAAGCCCAAGGATGTTCTCGGAATA 487 183 2131 Antisense
AGACCCGAATTCCACGAGAGTCAAA 292 69 2182 Antisense
GCATAAAGAAGACCACCAAATCGTG 434 299 2210 Antisense
ACTCATCGACCAACTAAACATAGAA 689 99 2241 Antisense
GGATCAACTCGGATTTGTTCGCTTA 281 507 2268 Antisense
AGCCGAATCGGAGCAGACACTTACA 546 83 2310 Antisense
AAGGCTCAACTTCATTCGAATCAAC 193 161 2477 Antisense
CATTCGAATCAACACCACCATCGTC 133 217 2489 Antisense
CCTCCTGACGTTGGGTCTAACAACT 217 267 2515 Antisense
Sequence Source Affymetrix Proprietary Database