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[190855_at] cathepsin-like peptidase

Description C32B5.7 /REP_DB=WormBase Gene ID /WP=CE08515 /TR=P91111 /GB=AAB37963.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=cathepsin-like peptidase
Cluster 6grp_total > 56      4grp_total > 0      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 54
1 2 3 4 range
A 18.1
(-1.8)
A 		7.3
(-3)
A 		33.3
(-0.1)
A 		61.2
(3)
A 		54
B 24.6
(0.6)
A 		8
(-3)
A 		21.7
(-0.1)
A 		35.9
(3)
A 		28
C 7.3
(-3)
A 		20.2
(-1.5)
A 		15.5
(-2.1)
A 		59.7
(3)
A 		52
avr 16.7
(-2.3) 		11.8
(-3) 		23.5
(-1.3) 		52.3
(3) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 59
1 2 3 4 5 6 range
A 11
(-3)
A 		37.1
(0.1)
A 		11.5
(-2.9)
A 		15.5
(-2.5)
A 		11.1
(-3)
A 		62
(3)
A 		51
B 14.1
(2.3)
A 		15.6
(3)
A 		8.2
(-0.5)
A 		13.5
(2)
A 		3.8
(-2.6)
A 		3
(-3)
A 		13
C 16.2
(-0.3)
A 		14.7
(-0.7)
A 		29.8
(3)
A 		5.4
(-3)
A 		19.8
(0.5)
A 		8.8
(-2.2)
A 		24
avr 13.8
(-1.9) 		22.5
(2) 		16.5
(-0.7) 		11.5
(-3) 		11.6
(-3) 		24.6
(3) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 6.6
(1.1)
A 		1.6
(-3)
A 		8.7
(2.8)
A 		9
(3)
A 		7
B 7.9
(3)
A 		2
(-3)
A 		5
(0.1)
A 		7.6
(2.7)
A 		6
C 2.4
(-3)
A 		5.8
(-0.4)
A 		5.4
(-0.7)
A 		10.1
(3)
A 		8
avr 5.6
(-0.4) 		3.1
(-3) 		6.4
(0.4) 		8.9
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 2
(-3)
A 		13.2
(2.1)
A 		2.5
(-2.8)
A 		3.9
(-2.1)
A 		3.3
(-2.4)
A 		15.1
(3)
A 		13
B 4.9
(2.6)
A 		5.2
(3)
A 		2
(-1.7)
A 		3.6
(0.7)
A 		1.6
(-2.3)
A 		1.1
(-3)
A 		4
C 6
(1.5)
A 		4.5
(0.1)
A 		7.6
(3)
A 		1.1
(-3)
A 		6.4
(1.9)
A 		3
(-1.2)
A 		7
avr 4.3
(-1.2) 		7.6
(3) 		4
(-1.6) 		2.9
(-3) 		3.8
(-1.9) 		6.4
(1.5) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190855_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5506
Sequence Type Exemplar sequence
Representative Public ID C32B5.7 NCBI
Target Description C32B5.7 /REP_DB=WormBase Gene ID /WP=CE08515 /TR=P91111 /GB=AAB37963.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=cathepsin-like peptidase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061466(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061466 NCBI Caenorhabditis elegans C32B5.7 (C32B5.7) mRNA, complete cds. 11/11 None
SNAP00000042175 ENSEMBL cdna:SNAP chromosome:CEL140:II:960542:970525:1 11/11 None
C32B5.7 ENSEMBL cdna:known chromosome:CEL140:II:963012:964051:1 gene:C32B5.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:963010-964050(+) 100.0 100.0
Public Domain and Genome References
Gene Title cathepsin-like peptidase
Ensembl C32B5.7
Entrez Gene 183111 Entrez gene
SwissProt P91111 EMBL-EBI
WormBase CE08515 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8234 cysteine-type peptidase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_493867 C32B5.7 [Caenorhabditis elegans] gb|AAB37963.1| Hypothetical protein C32B5.7 [Caenorhabditis elegans] 1.0E-144
blast NP_493867 C32B5.7 [Caenorhabditis elegans] gb|AAB37963.1| Hypothetical protein C32B5.7 [Caenorhabditis elegans] 1.0E-123
blast NP_493869 C32B5.6 [Caenorhabditis elegans] gb|AAB37962.1| Hypothetical protein C32B5.6 [Caenorhabditis elegans] 5.0E-64
blast AAK29985 Hypothetical protein Y71H2AR.2 [Caenorhabditis elegans] ref|NP_497627.1| Y71H2AR.2 [Caenorhabditis elegans] 6.0E-62
blast AAB71030 Hypothetical protein K02E7.10 [Caenorhabditis elegans] ref|NP_493904.1| K02E7.10 [Caenorhabditis elegans] 6.0E-56
blast AAK29985 Hypothetical protein Y71H2AR.2 [Caenorhabditis elegans] ref|NP_497627.1| Y71H2AR.2 [Caenorhabditis elegans] 7.0E-54
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493867.1 1 39-58
C32B5.7 1 39-58
SNAP00000042175 1 40-59
Sequence
Target Sequence 
>C. ELEGANS:190855_AT
ctcctcactgcgttaacgttctacatcattggtgcattagttcaacaaagaactcaaaac
tacaagaatgccaaaaaaccgtttttggattggagggatgaaggagtcgttggacctgtg
aaagatcaggggaattgcaatgcatcctatgcttttgctgcaatttcagccattgagtcc
atgtacgccatcgccaacggacaacttttgtcgttttcggagcagcagattattgattgc
ttgggcggttgtgcaatcgaatcagatccaatgatggcgatgacttacttggaacgtaaa
ggaatagaaacatatacggactacccatttgttggcaagaaaaatgaaaaatgtgaatat
gactcaaaaaaagcgtatcttatactagatgacacttatgatatgagcgatgaatctttg
gcattggtgtttatcgacgaaaggggacctgggctattcacaatgaatactccaccatcc
ttcttcaactacaaaagtggaatctacaaccccactgaggaaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCCTCACTGCGTTAACGTTCTACA 559 235 142 Antisense
GGGGAATTGCAATGCATCCTATGCT 77 499 270 Antisense
GCTGCAATTTCAGCCATTGAGTCCA 592 295 298 Antisense
CCATCGCCAACGGACAACTTTTGTC 555 271 329 Antisense
GCTTGGGCGGTTGTGCAATCGAATC 222 229 380 Antisense
ATGATGGCGATGACTTACTTGGAAC 516 45 412 Antisense
ATATACGGACTACCCATTTGTTGGC 47 15 453 Antisense
GAATCTTTGGCATTGGTGTTTATCG 147 329 553 Antisense
GAAAGGGGACCTGGGCTATTCACAA 108 359 580 Antisense
TCACAATGAATACTCCACCATCCTT 99 629 599 Antisense
GAATCTACAACCCCACTGAGGAAGA 94 327 641 Antisense
Sequence Source Affymetrix Proprietary Database