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[190852_at] glutathione S-transferase

Description T26C5.1 /REP_DB=WormBase Gene ID /WP=CE03737 /TR=Q22814 /GB=CAA90726.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=glutathione S-transferase
Cluster 6grp_highest_10_10 > 25      6grp_high1_10_10 > 40      4grp_highest_8_8 > 33      4grp_high_8_8 > 58      6grp_highest_nonorm > 43      6grp_total > 52      4grp_total > 61      6grp_highest_sub > 03      6grp_cgc > 92      6grp_high1_sub > 03      6grp_cgc_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1509
1 2 3 4 range
A 1941.3
(3)
P 		1456.3
(0.7)
P 		1598.1
(1.4)
P 		649.7
(-3)
P 		1292
B 1951.9
(3)
P 		1593.4
(1.5)
P 		1648.1
(1.7)
P 		530.3
(-3)
P 		1422
C 1905.3
(3)
P 		1583.6
(1.7)
P 		1702.1
(2.2)
P 		443.2
(-3)
P 		1462
avr 1932.8
(3) 		1544.4
(1.3) 		1649.4
(1.8) 		541.1
(-3) 		1392

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1343
1 2 3 4 5 6 range
A 903.1
(-2.3)
P 		1012.1
(-1.8)
P 		2095.2
(3)
P 		1332.7
(-0.4)
P 		752.5
(-3)
P 		824.3
(-2.7)
P 		1343
B 1013.2
(-1.3)
P 		1314.3
(1)
P 		1589.5
(3)
P 		1323.1
(1)
P 		780.9
(-3)
P 		929.2
(-1.9)
P 		809
C 990.2
(-1.6)
P 		1056.5
(-1.2)
P 		1764.1
(3)
P 		1332.5
(0.4)
P 		757.5
(-3)
P 		960.1
(-1.8)
P 		1007
avr 968.8
(-1.8) 		1127.6
(-0.9) 		1816.3
(3) 		1329.4
(0.2) 		763.6
(-3) 		904.5
(-2.2) 		1053
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 632
1 2 3 4 range
A 706.8
(3)
P 		316.1
(-0.8)
P 		417.8
(0.2)
P 		95.1
(-3)
P 		612
B 622.4
(3)
P 		393.5
(0.3)
P 		381.9
(0.2)
P 		113
(-3)
P 		509
C 630.7
(3)
P 		455.3
(1.1)
P 		593.2
(2.6)
P 		74.7
(-3)
P 		556
avr 653.3
(3) 		388.3
(0.2) 		464.3
(1) 		94.3
(-3) 		559

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 290
1 2 3 4 5 6 range
A 166.5
(-3)
P 		359.9
(1)
P 		456.3
(3)
P 		338
(0.6)
P 		227.1
(-1.7)
P 		200.7
(-2.3)
P 		290
B 352.5
(-1.2)
P 		437.5
(3)
P 		386
(0.4)
P 		350.4
(-1.3)
P 		317.3
(-3)
P 		346.5
(-1.5)
P 		120
C 367
(0.6)
P 		322.4
(-0.7)
P 		449
(3)
P 		268
(-2.3)
P 		245.1
(-3)
P 		321.4
(-0.8)
P 		204
avr 295.3
(-1.8) 		373.3
(1) 		430.4
(3) 		318.8
(-1) 		263.2
(-3) 		289.5
(-2.1) 		167
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190852_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2726
Sequence Type Exemplar sequence
Representative Public ID T26C5.1 NCBI
Target Description T26C5.1 /REP_DB=WormBase Gene ID /WP=CE03737 /TR=Q22814 /GB=CAA90726.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=glutathione S-transferase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063566(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063566 NCBI Caenorhabditis elegans Glutathione S-Transferase family member (gst-13) (gst-13) mRNA, complete cds. 11/11 None
SNAP00000039778 ENSEMBL cdna:SNAP chromosome:CEL140:II:9231451:9232185:1 11/11 None
GENEFINDER00000039786 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:9231451:9235917:1 11/11 None
T26C5.1 ENSEMBL cdna:known chromosome:CEL140:II:9231409:9232238:1 gene:T26C5.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9231447-9232182(+) 99.52 100.0
Public Domain and Genome References
Gene Title glutathione S-transferase
Gene Symbol gst-13
Ensembl T26C5.1
Entrez Gene 188915 Entrez gene
SwissProt Q22814 EMBL-EBI
WormBase CE03737 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA90727 Hypothetical protein T26C5.2 [Caenorhabditis elegans] ref|NP_495968.2| T26C5.2 [Caenorhabditis elegans] 0.0
blast CAE57893 Hypothetical protein CBG00939 [Caenorhabditis briggsae] 0.0
blast CAA90726 Hypothetical protein T26C5.1 [Caenorhabditis elegans] ref|NP_495967.1| Glutathione S-Transferase family member (gst-13) [Caenorhabditis elegans] 1.0E-105
blast CAA90726 Hypothetical protein T26C5.1 [Caenorhabditis elegans] ref|NP_495967.1| Glutathione S-Transferase family member (gst-13) [Caenorhabditis elegans] 1.0E-104
blast CAE57876 Hypothetical protein CBG00918 [Caenorhabditis briggsae] 7.0E-83
blast CAE73255 Hypothetical protein CBG20671 [Caenorhabditis briggsae] 3.0E-55
Protein Domains
Database ID Description E-Value
Pfam IPR004046 EMBL-EBI Glutathione S-transferase, C-terminal 1.6E-6
Pfam IPR004045 EMBL-EBI Glutathione S-transferase, N-terminal 1.6E-18
Pfam IPR003014 EMBL-EBI N/apple PAN 1.1E-7
Pfam IPR003014 EMBL-EBI N/apple PAN 2.9E-17
Pfam IPR003014 EMBL-EBI N/apple PAN 1.5E-18
Sequence
Target Sequence 
>C. ELEGANS:190852_AT
aagcttacatatttcttgtctcgtggacttggagacgtttctcgtcagctgttccatttg
gcagacgtagatttcgaagacgagaggcttgaaaagcctcactttttggagaagaaagag
acatatccattcaaacaagtcccagtgctctctgttgatggatttcaaattccccaatct
atggcaattgctaggtacttggcaaagaagtttggattcgcaggaaaaacagctgaagag
tcagcaatggtggatgcatttgtcgaccaattcaaagacttttactccgaaattcgtgac
tattactacaccatgttaggtcttggattgactgatctggacggtgatgaacagaaggat
aaggtcctgattccggcaagagacaaatttctgccacttcttaccagatatcttgagaag
agcaagtcaggatttttagtggacggaggccttacttttgctgatttgattattcttgat
aacatgacgtcgcttctcaattggt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGCTTACATATTTCTTGTCTCGTG 78 151 25 Antisense
TGGAGACGTTTCTCGTCAGCTGTTC 683 547 54 Antisense
GTCAGCTGTTCCATTTGGCAGACGT 392 465 68 Antisense
TCAAACAAGTCCCAGTGCTCTCTGT 610 629 155 Antisense
GATGGATTTCAAATTCCCCAATCTA 611 407 181 Antisense
GGTGGATGCATTTGTCGACCAATTC 76 499 273 Antisense
GATAAGGTCCTGATTCCGGCAAGAG 168 421 382 Antisense
GAGACAAATTTCTGCCACTTCTTAC 144 393 404 Antisense
GCCACTTCTTACCAGATATCTTGAG 552 279 417 Antisense
TTAGTGGACGGAGGCCTTACTTTTG 17 613 460 Antisense
AACATGACGTCGCTTCTCAATTGGT 252 137 505 Antisense
Sequence Source Affymetrix Proprietary Database