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[190851_at]

Description F54D8.3 /REP_DB=WormBase Gene ID /WP=CE01309 /TR=Q20780 /GB=AAA20615.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=Aldehyde dehydrogenase 2
Cluster 6grp_highest_10_10 > 26      6grp_high1_10_10 > 51      4grp_highest_8_8 > 33      4grp_high_8_8 > 58      6grp_highest_nonorm > 07      6grp_total > 51      4grp_total > 61      6grp_highest_sub > 03      6grp_cgc > 83      6grp_high1_sub > 03      6grp_cgc_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6334
1 2 3 4 range
A 9871.3
(3)
P 		7770.6
(1)
P 		8678.6
(1.9)
P 		3634.3
(-3)
P 		6237
B 9968.7
(3)
P 		6990.4
(-0.2)
P 		8812.9
(1.8)
P 		4418.8
(-3)
P 		5550
C 9745.9
(3)
P 		7244.7
(0.3)
P 		8724.2
(1.9)
P 		4120.2
(-3)
P 		5626
avr 9862
(3) 		7335.2
(0.4) 		8738.6
(1.8) 		4057.8
(-3) 		5804

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6998
1 2 3 4 5 6 range
A 12796.8
(-1.1)
P 		13443.6
(-0.4)
P 		17071.4
(3)
P 		14189.7
(0.3)
P 		12023.6
(-1.8)
P 		10743.7
(-3)
P 		6328
B 11886
(-2.1)
P 		14299.2
(0)
P 		17741.6
(3)
P 		15080.3
(0.7)
P 		10851.8
(-3)
P 		10960.4
(-2.9)
P 		6890
C 11250.9
(-3)
P 		14286
(0.7)
P 		16087.9
(3)
P 		16128.2
(3)
P 		11867.9
(-2.2)
P 		11465.5
(-2.7)
P 		4877
avr 11977.9
(-2.1) 		14009.6
(-0) 		16967
(3) 		15132.7
(1.1) 		11581.1
(-2.5) 		11056.5
(-3) 		5911
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3062
1 2 3 4 range
A 3594.1
(3)
P 		1686.8
(-0.7)
P 		2268.7
(0.4)
P 		532
(-3)
P 		3062
B 3178.9
(3)
P 		1726.5
(-0.9)
P 		2042.2
(-0)
P 		941.7
(-3)
P 		2237
C 3226.2
(3)
P 		2082.9
(0.3)
P 		3040.7
(2.6)
P 		694.7
(-3)
P 		2532
avr 3333.1
(3) 		1832.1
(-0.5) 		2450.5
(1) 		722.8
(-3) 		2610

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2422
1 2 3 4 5 6 range
A 2359
(-3)
P 		4781.2
(3)
P 		3717.8
(0.4)
P 		3598.8
(0.1)
P 		3628.2
(0.1)
P 		2615.8
(-2.4)
P 		2422
B 4135.7
(-1.9)
P 		4759.6
(3)
P 		4308.2
(-0.5)
P 		3994.2
(-3)
P 		4409
(0.3)
P 		4087.1
(-2.3)
P 		765
C 4170.2
(2)
P 		4359.1
(3)
P 		4094.7
(1.6)
P 		3243.4
(-3)
P 		3840.3
(0.2)
P 		3838.2
(0.2)
P 		1116
avr 3555
(-2.8) 		4633.3
(3) 		4040.2
(-0.2) 		3612.1
(-2.5) 		3959.2
(-0.6) 		3513.7
(-3) 		1120
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190851_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7664
Sequence Type Exemplar sequence
Representative Public ID F54D8.3 NCBI
Target Description F54D8.3 /REP_DB=WormBase Gene ID /WP=CE01309 /TR=Q20780 /GB=AAA20615.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=Aldehyde dehydrogenase 2
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065680(11), NM_181921(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065680 NCBI Caenorhabditis elegans ALdehyde deHydrogenase family member (alh-1) (alh-1) mRNA, complete cds. 11/11 None
NM_181921 NCBI Caenorhabditis elegans ALdehyde deHydrogenase family member (alh-1) (alh-1) mRNA, complete cds. 11/11 None
SNAP00000022620 ENSEMBL cdna:SNAP chromosome:CEL140:III:5077725:5080464:1 11/11 None
GENEFINDER00000022630 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:5077725:5080464:1 11/11 None
F54D8.3a.2 ENSEMBL cdna:known chromosome:CEL140:III:5077722:5080624:1 gene:F54D8.3 11/11 None
F54D8.3a.4 ENSEMBL cdna:known chromosome:CEL140:III:5077724:5080760:1 gene:F54D8.3 11/11 None
F54D8.3b.2 ENSEMBL cdna:known chromosome:CEL140:III:5077724:5080464:1 gene:F54D8.3 11/11 None
F54D8.3a.3 ENSEMBL cdna:known chromosome:CEL140:III:5077724:5080760:1 gene:F54D8.3 11/11 None
F54D8.3a.1 ENSEMBL cdna:known chromosome:CEL140:III:5077724:5080624:1 gene:F54D8.3 11/11 None
F54D8.3b.1 ENSEMBL cdna:known chromosome:CEL140:III:5077931:5080464:1 gene:F54D8.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5077582-5080463(+) 99.88 100.0
Public Domain and Genome References
Ensembl F54D8.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA20615 Aldehyde dehydrogenase protein 1, isoform a [Caenorhabditis elegans] ref|NP_498081.2| ALdehyde deHydrogenase family member (alh-1) [Caenorhabditis elegans] 0.0
blast CAE75088 Hypothetical protein CBG23008 [Caenorhabditis briggsae] 0.0
blast AAN63391 Aldehyde dehydrogenase protein 1, isoform b [Caenorhabditis elegans] ref|NP_871650.1| ALdehyde deHydrogenase family member (alh-1) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002086 EMBL-EBI Aldehyde dehydrogenase 1.0E-126
Pfam IPR002086 EMBL-EBI Aldehyde dehydrogenase 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:190851_AT
aaggacagtgctgttgtgccggatccagaacatttgtcgaaggaaagatctatgatgatt
tcgtagctcgttccaaggaattggccgagaaggctgttatcggagatccatttgatttga
aaactactcaaggaccacaagttgacggaaagcaggttgagactattttaaaatatatcg
ctgctggaaagaaggatggagctcaattggtgactggaggagccaaacacggagatcaag
gacactttgtgaagccaactatcttcgctaatgttaaggatcagatgactattgctcaag
aagaaatctttggacctgttatgactatcattagattcgacacaatggaagaattagttg
aaaaggctaataacactatttatggattggctgctggagttatgactaaggatattgata
aggcacttcatattgccaacgcaaccagagctggatctgtctgggttaattgttacgatg
tgttcgatgctgctgctccattcggaggattcaagcagtccggaatcggtcgcgaactc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGGACAGTGCTGTTGTGCCGGATC 460 161 1037 Antisense
TGATGATTTCGTAGCTCGTTCCAAG 132 567 1089 Antisense
GAAGGCTGTTATCGGAGATCCATTT 591 333 1125 Antisense
GGATGGAGCTCAATTGGTGACTGGA 272 515 1230 Antisense
AGGACACTTTGTGAAGCCAACTATC 170 55 1275 Antisense
AAGCCAACTATCTTCGCTAATGTTA 580 147 1288 Antisense
ATCTTTGGACCTGTTATGACTATCA 474 31 1342 Antisense
TTGCCAACGCAACCAGAGCTGGATC 574 699 1469 Antisense
AGCTGGATCTGTCTGGGTTAATTGT 301 81 1485 Antisense
TACGATGTGTTCGATGCTGCTGCTC 244 647 1510 Antisense
GCAGTCCGGAATCGGTCGCGAACTC 55 313 1551 Antisense
Sequence Source Affymetrix Proprietary Database