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[190849_at] glucuronosyltransferase

Description F10D2.11 /REP_DB=WormBase Gene ID /WP=CE09322 /TR=O16922 /GB=AAC48241.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=glucuronosyltransferase
Cluster 6grp_highest_10_10 > 67      6grp_high1_10_10 > 86      4grp_highest_8_8 > 14      4grp_high_8_8 > 14      6grp_highest_nonorm > 94      6grp_total > 76      4grp_total > 09      6grp_highest_sub > In      6grp_cgc > 48      6grp_high1_sub > In      6grp_cgc_sub > Da      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1152
1 2 3 4 range
A 116
(-3)
P 		314.3
(-1.9)
P 		408.7
(-1.3)
P 		1156
(3)
P 		1040
B 181
(-3)
P 		302.6
(-2.2)
P 		365.4
(-1.8)
P 		1085.4
(3)
P 		904
C 171.5
(-3)
P 		405.5
(-1.7)
P 		389.9
(-1.8)
P 		1268.2
(3)
P 		1097
avr 156.2
(-3) 		340.8
(-1.9) 		388
(-1.6) 		1169.9
(3) 		1014

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1232
1 2 3 4 5 6 range
A 247.2
(-3)
P 		284
(-2.8)
P 		666.4
(-0.5)
P 		567.3
(-1.1)
P 		493.4
(-1.5)
P 		1262.8
(3)
P 		1016
B 285
(-3)
P 		276.6
(-3)
P 		541.5
(-1.5)
P 		503.4
(-1.7)
P 		430.5
(-2.1)
P 		1326.6
(3)
P 		1050
C 381.2
(-2.6)
P 		306.4
(-3)
P 		473.9
(-2.1)
P 		399.4
(-2.5)
P 		468.2
(-2.2)
P 		1479.4
(3)
P 		1173
avr 304.5
(-2.9) 		289
(-3) 		560.6
(-1.5) 		490
(-1.9) 		464
(-2) 		1356.3
(3) 		1067
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 189
1 2 3 4 range
A 42.2
(-3)
P 		68.2
(-1.8)
P 		106.8
(0.1)
P 		169.2
(3)
P 		127
B 57.7
(-3)
P 		74.7
(-2.4)
P 		84.7
(-2.1)
P 		231.3
(3)
P 		174
C 56.8
(-3)
P 		116.6
(-0.7)
P 		135.9
(0)
P 		213.8
(3)
P 		157
avr 52.2
(-3) 		86.5
(-1.7) 		109.1
(-0.8) 		204.8
(3) 		153

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 450
1 2 3 4 5 6 range
A 45.6
(-3)
P 		101
(-1.7)
P 		145.1
(-0.7)
P 		143.9
(-0.7)
P 		148.9
(-0.6)
P 		307.5
(3)
P 		262
B 99.2
(-2.9)
P 		92.1
(-3)
P 		131.5
(-2.4)
P 		133.3
(-2.4)
P 		174.9
(-1.8)
P 		494.7
(3)
P 		403
C 141.3
(-2.1)
P 		93.5
(-2.8)
P 		120.6
(-2.4)
P 		80.3
(-3)
P 		151.5
(-2)
P 		495.2
(3)
P 		415
avr 95.4
(-3) 		95.5
(-3) 		132.4
(-2.3) 		119.2
(-2.6) 		158.4
(-1.9) 		432.5
(3) 		337
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190849_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11263
Sequence Type Exemplar sequence
Representative Public ID F10D2.11 NCBI
Target Description F10D2.11 /REP_DB=WormBase Gene ID /WP=CE09322 /TR=O16922 /GB=AAC48241.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=glucuronosyltransferase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072417(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072417 NCBI Caenorhabditis elegans F10D2.11 (glucuronosyltransferase) mRNA, complete cds. 11/11 None
SNAP00000033814 ENSEMBL cdna:SNAP chromosome:CEL140:V:7163839:7166157:-1 11/11 None
GENEFINDER00000033816 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7163783:7166188:-1 10/11 None
F10D2.11 ENSEMBL cdna:known chromosome:CEL140:V:7163689:7166187:-1 gene:F10D2.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7163839-7166158(-) 100.0 100.0
Public Domain and Genome References
Gene Title glucuronosyltransferase
Gene Symbol ugt-41
Ensembl F10D2.11
Entrez Gene 184295 Entrez gene
SwissProt O16922 EMBL-EBI
WormBase CE36127 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16758 transferase activity, transferring hexosyl groups inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_504818 F10D2.11 [Caenorhabditis elegans] gb|AAC48241.2| Hypothetical protein F10D2.11 [Caenorhabditis elegans] 0.0
blast NP_503278 F31F4.7 [Caenorhabditis elegans] gb|AAG24089.2| Hypothetical protein F31F4.7 [Caenorhabditis elegans] 0.0
blast CAE72012 Hypothetical protein CBG19093 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 7.0E-13
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 7.0E-13
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 3.4E-10
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504818.2 1 489-511
F10D2.11 1 489-511
SNAP00000033814 1 435-457
GENEFINDER00000033816 1 13-35
Sequence
Target Sequence 
>C. ELEGANS:190849_AT
tgaaatccttcaaaaacgtgtcttttatttggaagtatgaatcagaagaaaccagttttg
caaatggagctgaaaatataatttttagcaagtgggtacctcaaacggctcttctagctg
attcccgtctctcagcatttttcactcacggaggtcttggaagtgtcaatgagttgagct
acctcggaaaacctgcgctcttgtgcccactttttgccgatcaaattcgcaactcaaaaa
tgctcactcgccacaatggatcaattgaaatatctaaatttaatctggaaaactataata
ccttgcgatctgccttgcatagtatacttttcgctgaaagttactcggaaaacgcagaga
aattggcgaaaaaattggaatatcagccaactaaacctaaggaattgtttgttagacatg
cagagtttgcagctcgatttggtgagcagccggcacaagatagtaatcttcgaactatgg
gatttgccgcctattatttattagatgttatcgcattcttgacgagtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAAATCCTTCAAAAACGTGTCTTT 567 571 974 Antisense
AGCAAGTGGGTACCTCAAACGGCTC 46 75 1060 Antisense
GTTGAGCTACCTCGGAAAACCTGCG 332 433 1146 Antisense
TTTGCCGATCAAATTCGCAACTCAA 368 667 1186 Antisense
AACTATAATACCTTGCGATCTGCCT 560 139 1264 Antisense
CCTTGCGATCTGCCTTGCATAGTAT 93 271 1274 Antisense
GGAATATCAGCCAACTAAACCTAAG 418 525 1350 Antisense
GCAGCTCGATTTGGTGAGCAGCCGG 514 313 1402 Antisense
GAGCAGCCGGCACAAGATAGTAATC 653 387 1417 Antisense
ACTATGGGATTTGCCGCCTATTATT 255 101 1447 Antisense
GATGTTATCGCATTCTTGACGAGTT 29 411 1477 Antisense
Sequence Source Affymetrix Proprietary Database