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[190844_at] nuclear hormone receptor

Description R07B7.14 /REP_DB=WormBase Gene ID /WP=CE06276 /TR=Q21804 /GB=CAB00123.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=nuclear hormone receptor
Cluster 6grp_total > 41      4grp_total > 06      6grp_cgc > 71      6grp_cgc_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 54
1 2 3 4 range
A 27.9
(-1.2)
A 		15.3
(-3)
A 		37.3
(0.2)
P 		56.3
(3)
A 		41
B 30.8
(3)
A 		12
(-3)
A 		21
(-0.1)
A 		27
(1.8)
A 		19
C 20
(-0.9)
A 		2
(-3)
A 		17.9
(-1.1)
A 		53
(3)
A 		51
avr 26.2
(-0.2) 		9.8
(-3) 		25.4
(-0.4) 		45.4
(3) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 60
1 2 3 4 5 6 range
A 58.3
(2.3)
A 		14.6
(-2.3)
A 		59.7
(2.5)
P 		64.9
(3)
P 		7.5
(-3)
A 		21.4
(-1.5)
A 		57
B 41.6
(-1.3)
P 		56.7
(1.2)
M 		67.7
(3)
P 		37.7
(-2)
A 		36.3
(-2.2)
A 		31.4
(-3)
A 		36
C 42.6
(-1)
P 		66.1
(3)
P 		44.9
(-0.6)
A 		38.3
(-1.7)
A 		32
(-2.8)
A 		30.9
(-3)
A 		35
avr 47.5
(1.1) 		45.8
(0.8) 		57.4
(3) 		47
(1.1) 		25.3
(-3) 		27.9
(-2.5) 		32
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 10.1
(3)
A 		3.3
(-3)
A 		9.8
(2.7)
P 		8.2
(1.3)
A 		7
B 9.8
(3)
A 		3
(-3)
A 		4.9
(-1.3)
A 		5.7
(-0.6)
A 		7
C 6.6
(1.3)
A 		0.6
(-3)
A 		6.2
(1)
A 		8.9
(3)
A 		8
avr 8.8
(3) 		2.3
(-3) 		7
(1.3) 		7.6
(1.9) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 10.8
(0.6)
A 		5.2
(-1.8)
A 		13
(1.5)
P 		16.5
(3)
P 		2.3
(-3)
A 		5.2
(-1.8)
A 		14
B 14.5
(0)
P 		18.9
(3)
M 		16.4
(1.3)
P 		10
(-3)
A 		14.8
(0.2)
A 		11.7
(-1.9)
A 		9
C 15.8
(0.9)
P 		20.2
(3)
P 		11.4
(-1.2)
A 		7.7
(-3)
A 		10.3
(-1.8)
A 		10.3
(-1.8)
A 		13
avr 13.7
(1.8) 		14.8
(3) 		13.6
(1.7) 		11.4
(-0.6) 		9.1
(-3) 		9.1
(-3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190844_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13320
Sequence Type Exemplar sequence
Representative Public ID R07B7.14 NCBI
Target Description R07B7.14 /REP_DB=WormBase Gene ID /WP=CE06276 /TR=Q21804 /GB=CAB00123.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=nuclear hormone receptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073634(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073634 NCBI Caenorhabditis elegans R07B7.14 (R07B7.14) mRNA, complete cds. 11/11 None
SNAP00000027096 ENSEMBL cdna:SNAP chromosome:CEL140:V:12098822:12100433:1 11/11 None
R07B7.14 ENSEMBL cdna:known chromosome:CEL140:V:12098822:12100433:1 gene:R07B7.14 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12098821-12100433(+) 100.0 100.0
Public Domain and Genome References
Gene Title nuclear hormone receptor
Gene Symbol nhr-207
Ensembl R07B7.14
Entrez Gene 187661 Entrez gene
SwissProt Q21804 EMBL-EBI
WormBase CE06276 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
3707 steroid hormone receptor activity inferred from electronic annotation QuickGO AmiGO
4879 ligand-dependent nuclear receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB00123 Hypothetical protein R07B7.14 [Caenorhabditis elegans] ref|NP_506035.1| R07B7.14 [Caenorhabditis elegans] 0.0
blast CAB00124 Hypothetical protein R07B7.15 [Caenorhabditis elegans] ref|NP_506034.2| R07B7.15 [Caenorhabditis elegans] 1.0E-112
blast CAB00122 Hypothetical protein R07B7.13 [Caenorhabditis elegans] ref|NP_506033.1| R07B7.13 [Caenorhabditis elegans] 1.0E-108
Protein Domains
Database ID Description E-Value
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 4.9E-46
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 5.7E-18
Sequence
Target Sequence 
>C. ELEGANS:190844_AT
attcctgatcaggtatttcacgagtacggcggtcttgcacacaatagctttctcgcagtt
gttgaatttgcaaagtttctcgatttttttccaaaactggattcagagacacaactcaaa
gttgttcgtcatggtgcattgatggtcagaggaatgatgaatacagaaagatccattcga
aaattccattcagactgtgtacgtcgagctgatggaagcattgcaggaaaaccaatgaga
aattataatggaatatgggtagaacagagaaaaattgttcaaaagggtctacatgcattc
ctaagaaataaaatcgacgaaactgaatatttgttgctcaaagggattgttctatgtaat
ccagcaatatgtggacttcctgaatcagcacagcaaattctggaagacgagagacgacgg
tatgttcgaagtctcttgacatattgtttaaaacaatatggaatacgatatggtccagat
agactttcatcaatactttcaataatgccaattatggaaaatcagcagaaagaagaaaaa
agttttaatgttattcttcgttctttttattca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTCCTGATCAGGTATTTCACGAGT 680 7 610 Antisense
TTCACGAGTACGGCGGTCTTGCACA 107 685 626 Antisense
GTCTTGCACACAATAGCTTTCTCGC 272 469 641 Antisense
GCTTTCTCGCAGTTGTTGAATTTGC 263 305 656 Antisense
TCAAAGTTGTTCGTCATGGTGCATT 571 627 725 Antisense
CCATTCAGACTGTGTACGTCGAGCT 576 269 795 Antisense
AAAGGGTCTACATGCATTCCTAAGA 137 121 891 Antisense
GTGGACTTCCTGAATCAGCACAGCA 591 489 980 Antisense
GACGACGGTATGTTCGAAGTCTCTT 690 377 1022 Antisense
GATATGGTCCAGATAGACTTTCATC 669 425 1076 Antisense
TGTTATTCTTCGTTCTTTTTATTCA 356 561 1158 Antisense
Sequence Source Affymetrix Proprietary Database