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[190843_s_at] acetylcholine regulator

Description T07A9.10 /REP_DB=WormBase Gene ID /WP=CE17219 /TR=O44412 /GB=AAK39282.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=acetylcholine regulator
Cluster 6grp_highest_10_10 > 16      6grp_high1_10_10 > 50      4grp_highest_8_8 > 50      4grp_high_8_8 > 40      6grp_highest_nonorm > 62      6grp_total > 50      4grp_total > 55      6grp_highest_sub > 03_04      6grp_high1_sub > 03_04      6grp_total_sub > Hat      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 394
1 2 3 4 range
A 510.5
(3)
P 		350.1
(-1.8)
P 		324.9
(-2.5)
P 		309.5
(-3)
P 		201
B 624.1
(3)
P 		357.4
(-1.1)
P 		274.8
(-2.3)
P 		230.2
(-3)
P 		394
C 526.7
(3)
P 		271.9
(-2.2)
P 		348.3
(-0.6)
P 		230.8
(-3)
P 		296
avr 553.8
(3) 		326.5
(-1.6) 		316
(-1.8) 		256.8
(-3) 		297

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 344
1 2 3 4 5 6 range
A 418.1
(-2.2)
P 		546.8
(1)
P 		487
(-0.5)
P 		627.3
(3)
P 		385.9
(-3)
P 		461.8
(-1.1)
P 		241
B 454.2
(0.3)
P 		496.8
(1.9)
P 		510.5
(2.4)
P 		527.1
(3)
P 		387.5
(-2.2)
P 		364.9
(-3)
P 		162
C 558.7
(-0.3)
P 		439.7
(-2.9)
P 		709.1
(3)
P 		540.7
(-0.7)
P 		443.9
(-2.8)
P 		435.4
(-3)
P 		274
avr 477
(-0.4) 		494.4
(0.3) 		568.9
(3) 		565
(2.9) 		405.8
(-3) 		420.7
(-2.5) 		163
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 160
1 2 3 4 range
A 185.9
(3)
P 		76
(-1.7)
P 		84.9
(-1.3)
P 		45.3
(-3)
P 		141
B 199
(3)
P 		88.3
(-1.4)
P 		63.7
(-2.4)
P 		49.1
(-3)
P 		150
C 174.3
(3)
P 		78.2
(-1.3)
P 		121.4
(0.7)
P 		38.9
(-3)
P 		135
avr 186.4
(3) 		80.8
(-1.5) 		90
(-1.1) 		44.4
(-3) 		142

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 130
1 2 3 4 5 6 range
A 77.1
(-3)
P 		194.5
(3)
P 		106.1
(-1.5)
P 		159.1
(1.2)
P 		116.4
(-1)
P 		112.4
(-1.2)
P 		117
B 158
(1.9)
P 		165.4
(3)
P 		124
(-3)
P 		139.6
(-0.7)
P 		157.4
(1.8)
P 		136.1
(-1.2)
P 		41
C 207.1
(3)
P 		134.2
(-1.4)
P 		180.5
(1.4)
P 		108.7
(-3)
P 		143.7
(-0.9)
P 		145.7
(-0.7)
P 		98
avr 147.4
(-0.1) 		164.7
(3) 		136.9
(-2) 		135.8
(-2.2) 		139.2
(-1.6) 		131.4
(-3) 		33
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 190843_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10654
Sequence Type Exemplar sequence
Representative Public ID T07A9.10 NCBI
Target Description T07A9.10 /REP_DB=WormBase Gene ID /WP=CE17219 /TR=O44412 /GB=AAK39282.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=acetylcholine regulator
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067517(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067517 NCBI Caenorhabditis elegans T07A9.10 (T07A9.10) mRNA, complete cds. 11/11 None
SNAP00000017759 ENSEMBL cdna:SNAP chromosome:CEL140:IV:390606:393038:1 11/11 None
GENEFINDER00000017775 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:390606:396248:1 11/11 None
T07A9.10 ENSEMBL cdna:known chromosome:CEL140:IV:390512:393144:1 gene:T07A9.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:390605-393038(+) 100.0 100.0
Public Domain and Genome References
Gene Title acetylcholine regulator
Ensembl T07A9.10
Entrez Gene 176862 Entrez gene
SwissProt O44412 EMBL-EBI
WormBase CE17219 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
9306 protein secretion inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8565 protein transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK39282 Hypothetical protein T07A9.10 [Caenorhabditis elegans] ref|NP_499918.1| T07A9.10 [Caenorhabditis elegans] 0.0
blast CAE67944 Hypothetical protein CBG13544 [Caenorhabditis briggsae] 0.0
blast AAK39281 Hypothetical protein T07A9.9a [Caenorhabditis elegans] ref|NP_741288.1| T07A9.9a [Caenorhabditis elegans] sp|O44411|NOG1_CAEEL Probable nucleolar GTP-binding protein 0.0
blast CAE67897 Hypothetical protein CBG13493 [Caenorhabditis briggsae] 0.0
blast AAM97948 Hypothetical protein T07A9.9b [Caenorhabditis elegans] ref|NP_741289.1| T07A9.9b [Caenorhabditis elegans] 0.0
blast CAE67944 Hypothetical protein CBG13544 [Caenorhabditis briggsae] 1.0E-179
blast CAE70259 Hypothetical protein CBG16760 [Caenorhabditis briggsae] 1.0E-101
Protein Domains
Database ID Description E-Value
scop a.2.7.Seryl-tRNA synthetase (SerRS) All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Seryl-tRNA synthetase (SerRS) 2.70000004768372
Pfam IPR001619 EMBL-EBI Sec1-like protein 2.0E-83
Pfam IPR001619 EMBL-EBI Sec1-like protein 2.7E-31
Pfam IPR001619 EMBL-EBI Sec1-like protein 1.5E-40
Pfam IPR010674 EMBL-EBI Nucleolar GTP-binding 1 6.0E-35
Sequence
Target Sequence 
>C. ELEGANS:190843_S_AT
acgccggaacacgtacgtatcacggattctcaagcagttggacgactttccacgtttatt
ttaccagcaattccgactgaaactcgtcttcgattgattctcatttttatgttgactatc
ggaaaggataaagatgaacaatacttcaatcgacttctacatcacaccgatattcctgaa
tcggaatttcagattattaagagaatgctcatttggagagataaaactcagaaatctcaa
ttccaacatcgccgaccaccaccagaagacgagaggtttatcgcgagtcgttgggatccg
aaaatcaaaaatcttatcgaagaaatttacgaaagacgattggacgagcgggagttcaaa
gtagctggtaagaaatcgacgtctgacttccggccggcagcaagtgcgagatatggaagt
ggattggctggaaaaccacgcgaaaaacgaaaaattatcatttttgtcgtaggcggaatc
acatattctgaaatgagagtcgcctacgagttgtcgaaaaagacgaacacaacagtaatc
ctgggatcagacgaaattctaacgccgtcgtctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACGCCGGAACACGTACGTATCACGG 586 89 1087 Antisense
GTATCACGGATTCTCAAGCAGTTGG 586 453 1103 Antisense
TTTCCACGTTTATTTTACCAGCAAT 535 669 1133 Antisense
GCAATTCCGACTGAAACTCGTCTTC 67 323 1153 Antisense
ACTCGTCTTCGATTGATTCTCATTT 541 99 1168 Antisense
ACTTCAATCGACTTCTACATCACAC 407 103 1229 Antisense
TACATCACACCGATATTCCTGAATC 68 645 1244 Antisense
AGAAATCTCAATTCCAACATCGCCG 278 73 1316 Antisense
GAGAGGTTTATCGCGAGTCGTTGGG 709 391 1357 Antisense
AAGAAATCGACGTCTGACTTCCGGC 92 153 1456 Antisense
GACGAAATTCTAACGCCGTCGTCTT 350 377 1636 Antisense
Sequence Source Affymetrix Proprietary Database