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[190841_at] 7TM chemoreceptor, srd family

Description B0547.4 /REP_DB=WormBase Gene ID /WP=CE07772 /GEN=srd-8 /TR=P90999 /GB=AAB37993.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 4grp_high_8_8 > 29      6grp_total > 42      4grp_total > 26      6grp_cgc > 81      6grp_cgc_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 94
1 2 3 4 range
A 57
(-3)
M 		71.8
(-1.2)
M 		61.4
(-2.5)
A 		107.2
(3)
P 		50
B 37.2
(-3)
P 		67.6
(1.6)
A 		65.9
(1.4)
P 		76.6
(3)
P 		39
C 45.7
(-3)
P 		101.6
(0.9)
P 		63.2
(-1.8)
P 		130.9
(3)
P 		85
avr 46.6
(-3) 		80.3
(0.5) 		63.5
(-1.3) 		104.9
(3) 		58

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 80
1 2 3 4 5 6 range
A 35.8
(-3)
A 		53.6
(-1.2)
A 		93.8
(3)
P 		43.4
(-2.2)
A 		44.4
(-2.1)
P 		57.6
(-0.7)
A 		58
B 77
(3)
P 		58.8
(1.3)
P 		59.1
(1.3)
A 		44.3
(-0.1)
A 		66.6
(2)
P 		14
(-3)
A 		63
C 47.8
(1.3)
A 		53
(2.7)
P 		54.2
(3)
P 		52.6
(2.6)
A 		32
(-3)
A 		38.4
(-1.3)
P 		22
avr 53.5
(0.1) 		55.1
(0.4) 		69
(3) 		46.8
(-1.1) 		47.7
(-1) 		36.7
(-3) 		32
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 20.8
(3)
M 		15.6
(-3)
M 		16
(-2.5)
A 		15.7
(-2.9)
P 		5
B 11.9
(-3)
P 		16.7
(3)
A 		15.3
(1.3)
P 		16.3
(2.5)
P 		5
C 15.1
(-3)
P 		29.2
(3)
P 		22
(-0.1)
P 		22.1
(-0)
P 		14
avr 15.9
(-3) 		20.5
(3) 		17.8
(-0.5) 		18
(-0.3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 6.6
(-3)
A 		19.1
(2.4)
A 		20.4
(3)
P 		11
(-1.1)
A 		13.4
(-0)
P 		14
(0.2)
A 		14
B 26.8
(2.9)
P 		19.6
(0.9)
P 		14.4
(-0.5)
A 		11.7
(-1.2)
A 		27.1
(3)
P 		5.2
(-3)
A 		22
C 17.7
(3)
A 		16.2
(1.8)
P 		13.8
(-0.2)
P 		10.6
(-2.8)
A 		10.3
(-3)
A 		12.9
(-0.9)
P 		7
avr 17
(2) 		18.3
(3) 		16.2
(1.3) 		11.1
(-2.7) 		16.9
(1.9) 		10.7
(-3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190841_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11105
Sequence Type Exemplar sequence
Representative Public ID B0547.4 NCBI
Target Description B0547.4 /REP_DB=WormBase Gene ID /WP=CE07772 /GEN=srd-8 /TR=P90999 /GB=AAB37993.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068438(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068438 NCBI Caenorhabditis elegans Serpentine Receptor, class D (delta) family member (srd-8) (srd-8) mRNA, complete cds. 11/11 None
B0547.4 ENSEMBL cdna:known chromosome:CEL140:IV:5643237:5645599:-1 gene:B0547.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000013089 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:5643242-5645605(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srd family
Gene Symbol srd-8
Ensembl B0547.4
Entrez Gene 191798 Entrez gene
SwissProt P90999 EMBL-EBI
WormBase CE07772 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37993 Serpentine receptor, class d (delta) protein 8 [Caenorhabditis elegans] ref|NP_500839.1| Serpentine Receptor, class D (delta) family member (srd-8) [Caenorhabditis elegans] 1.0E-177
blast CAE72676 Hypothetical protein CBG19893 [Caenorhabditis briggsae] 1.0E-123
blast CAA94325 Hypothetical protein C06G8.4 [Caenorhabditis elegans] ref|NP_502001.1| Serpentine Receptor, class D (delta) family member (srd-7) [Caenorhabditis elegans] sp|Q17760|SRD7_CAEEL Serpentine receptor class delta-7 (Protein srd-7) 1.0E-101
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500839.1 7 5-27,40-62,92-114,127-149,180-202,236-258,268-290
B0547.4 7 5-27,40-62,92-114,127-149,180-202,236-258,268-290
Sequence
Target Sequence 
>C. ELEGANS:190841_AT
agtttattttccatcttttattcagttatcagcaatgctttttcaaaaaatggatctgga
tgaagttgaaactgcattgaaggataggttcccacaatttaattttactggattagcagt
cactggagcaattgatattattggttttgcaacactctacacattaattcatatgacaat
tatcagtattccacttgcaattggtattcaaatattgagaaggaagattattaatttatt
ggttttaaaaggagttgatttgacgacaaaatctagaaatctacatgcacaattattacg
gacgctcacattccaagcaactgtcccactgatatactttctcgatgtctttttcttttt
tctcactcacatttggaataacccaattcttgaattttcaataataattccatctttaat
agttcccattctaatcccaatatcctcacttatatatgtaactccatatagaaattatgt
gttgcgatttttttcattgagaccgggactgcaggctgtaaactctcaaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGTTTATTTTCCATCTTTTATTCAG 143 63 414 Antisense
GGTTTTGCAACACTCTACACATTAA 156 507 556 Antisense
GACAATTATCAGTATTCCACTTGCA 246 365 588 Antisense
ATGCACAATTATTACGGACGCTCAC 653 43 698 Antisense
GACGCTCACATTCCAAGCAACTGTC 148 381 714 Antisense
GCAACTGTCCCACTGATATACTTTC 94 321 730 Antisense
ATACTTTCTCGATGTCTTTTTCTTT 523 23 747 Antisense
AATAGTTCCCATTCTAATCCCAATA 443 173 831 Antisense
TCTAATCCCAATATCCTCACTTATA 688 613 843 Antisense
CATTGAGACCGGGACTGCAGGCTGT 276 217 908 Antisense
GACTGCAGGCTGTAAACTCTCAAAG 423 375 920 Antisense
Sequence Source Affymetrix Proprietary Database